Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45360 325 / 1e-110 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037278 [exp] 551 / 0 AT5G45360 352 / 1e-121 F-box family protein (.1) Lus10022369 [exp] 48 / 1e-06 AT5G45360 40 / 2e-04 F-box family protein (.1) Lus10008402 [exp] 47 / 2e-05 AT5G21040 658 / 0.0 F-box protein 2 (.1.2) Lus10007767 [exp] 45 / 2e-05 AT5G45360 38 / 0.001 F-box family protein (.1) Lus10026770 [exp] 46 / 3e-05 AT5G21040 647 / 0.0 F-box protein 2 (.1.2) Lus10039308 [exp] 42 / 0.0006 AT5G52880 211 / 1e-67 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G236200 [exp] 416 / 1e-146 AT5G45360 349 / 2e-120 F-box family protein (.1) Potri.009G157900 [exp] 49 / 3e-06 AT5G21040 670 / 0.0 F-box protein 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10035689 pacid=23147469 polypeptide=Lus10035689 locus=Lus10035689.g ID=Lus10035689.BGIv1.0 annot-version=v1.0 ATGGCGACTTGGGACGACGAAGACGATCTTTTAGCCCAGCTCCTAGAGTCAGAAATGCTCTCTGACCTCTCCGATCAGGATGAACCAGATGAGGCGAAGG ATGATGACGAGGAAGCAGAAGACGCAGAAATTCAACCAAAGGCGAAGAGAATTCGTGTTGACGAGGAGGAGAAAACCAAAATTGATCAGAAAGAGAAGGG GAAAGAGAAAGTTAACGACGAAAACGAGGATAGGGATAGGTCGAGGATTGCCAGGTTTAGGAGGATAGGTAGTGGGATATTCAGCCAAGTCCCTCCTGAG CTCTTCCCTCACATCCTCAAATTCCTTTCCTCTGAGGATCTTGTGTCGTGCTCGCTGGTTTGCAGGTTCATGAATTGTGCTGCATCTGACGAGTCCTTGT GGCGTCGCTTGTACTGCATGCGCTGGGGTCTCTTGCCTCCTTCAAATAACTTATCCCAGGCGTCTTGGAAGACACTTTATATCCAGCGCGATGAAGATGA CATGGCTAACCTGGTTAGGAACTGCCAGCCTGAGTTCAAACAATACTATATTCAAATGCAGGCAGCGAAGAGAAGCCAAGCACCAACTCCTTCACAGGTG AAAGATGACAATATACTTCTTGACAAGACTGTTGCTGATCAGATATCAATATGGAAAACCAGGAGAGGCCTGACTGACGCTGTGGTTACTGACCATAATT GCTCTGGAAACACATGTTCTTACTACCAAATTGGAGATGTCTTTGTTTGTGAGAAGACTGGAAATGTTCATGTCTGTGACGAGACCTGCAGAGAAAACAT CACCGATCCAGCAAATGAACTTTTGGTCTGTACAGTATCTGGACGTTGCTCTGATATACTGTTACCAACTGAAATGGAGCCGGAACCTGACCAGCAACAA TACTGCGGTACAGAGGAAGCAGAGCCGTTCATGGGATCCGGACGTTTTGCAAGGGCTTATATGCTGGGCTATAACTGCGACAATGAACAGGAGCTTCAAG ATGCTTTAAGGTTCTGCTGA
AA sequence Show only first row Show all	>Lus10035689 pacid=23147469 polypeptide=Lus10035689 locus=Lus10035689.g ID=Lus10035689.BGIv1.0 annot-version=v1.0 MATWDDEDDLLAQLLESEMLSDLSDQDEPDEAKDDDEEAEDAEIQPKAKRIRVDEEEKTKIDQKEKGKEKVNDENEDRDRSRIARFRRIGSGIFSQVPPE LFPHILKFLSSEDLVSCSLVCRFMNCAASDESLWRRLYCMRWGLLPPSNNLSQASWKTLYIQRDEDDMANLVRNCQPEFKQYYIQMQAAKRSQAPTPSQV KDDNILLDKTVADQISIWKTRRGLTDAVVTDHNCSGNTCSYYQIGDVFVCEKTGNVHVCDETCRENITDPANELLVCTVSGRCSDILLPTEMEPEPDQQQ YCGTEEAEPFMGSGRFARAYMLGYNCDNEQELQDALRFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45360			F-box family protein (.1)		Lus10035689 [exp]	0	1
AT1G53400			Ubiquitin domain-containing pr...		Lus10005423 [exp]	1.0	0.8388
AT3G62220			Protein kinase superfamily pro...		Lus10004524 [exp]	2.4	0.8385
AT5G10290			leucine-rich repeat transmembr...		Lus10023146 [exp]	3.2	0.7973
AT5G56190			Transducin/WD40 repeat-like su...		Lus10021975 [exp]	3.5	0.8223
AT1G29760			Putative adipose-regulatory pr...		Lus10007323 [exp]	4.9	0.8136
AT3G13340			Transducin/WD40 repeat-like su...		Lus10041268 [exp]	6.7	0.8063
AT5G06140		ATSNX1	ARABIDOPSIS THALIANA SORTING N...		Lus10016994 [exp]	8.1	0.7870
AT1G80400			RING/U-box superfamily protein...		Lus10023112 [exp]	9.5	0.8004
AT4G08920		OOP2, HY4, BLU1...	OUT OF PHASE 2, ELONGATED HYPO...		Lus10020930 [exp]	10.1	0.8053
AT4G29950			Ypt/Rab-GAP domain of gyp1p su...		Lus10001435 [exp]	10.6	0.8053

Compare expression of checked genes

Lus10035689 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.