Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19190 417 / 2e-140 zinc knuckle (CCHC-type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037279 [exp] 561 / 0 AT4G19190 465 / 1e-159 zinc knuckle (CCHC-type) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G236300 [exp] 430 / 2e-147 AT4G19190 401 / 7e-135 zinc knuckle (CCHC-type) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10197 [flax] [poplar] Cir_N N-terminal domain of CBF1 interacting co-repressor CIR
Representative CDS sequence Show only first row Show all	>Lus10035690 pacid=23147606 polypeptide=Lus10035690 locus=Lus10035690.g ID=Lus10035690.BGIv1.0 annot-version=v1.0 ATGGAGGGAGAAGAAGGAGGAGGGATGCGGCTGAGCAAGCGAATCAACAATGGAGAAGTCGATTACAAGACTAAATCTGGCACAGCTTGGAGCCATAACT TCCTCAACCAGAAGCCTTGGCATCCTCTCTCCTACCCTAACCAGCGCCGCAAGTGGATCGCTGAACAGACCCATGCCCAGCATAGCCGCCGCTCCGAGGA AGTTGCTCGCGAGTATGCTCAAGAGCAGGAATTCTTCCGGCAGACAGCTCTCATCTCCCAGAAAGAGAAGGAAAAGATGGAGATAATGCAAGCTGTTAGC TTCATGTACGTTCGCCCACCTGGCTATAATCCTGAAAGTGCCAAGGCAGCTGAGATTGCCGAGGAGGATAAAAAGAAGCAACAAGATACCGCCCCTACGG ACCCAACTGATGGGCAATCAGAATCACTGCCCAATAAAGATCCCCCAGTTGAAGAAAAGAAGAAACGAAGGCCTAAAGATGCCTTTGGCCGCCCTTTGCC AACTGAAGAGCAATTTGAAGTCCTGAAAAATGCTCCAAGGCATGATACAGGTGTTGCAACAAGGTCAAAACCTTTTGGAATTGAGGTGCGGAATGTGAAG TGTGTAAGATGTGGAAACTTTGGTCACCAAAGTGGCGATCGTGAATGTCCCCTGAAAGATGCTATAATGCCAAGTGAGGAAAGCCGACTGAAACGAGATG ATCCGTTGACTGCCATCATGGCTCAGATGGAGCCAGCAGAGCCGCTAAAGTGGGAGCTAAAGCAACAACCAGGGATGAGCCCTCCTCGGGGAGGTTTCGG TGCAGACGATCCGAATCAGCAGATTGTTGCAGAAGACATCTTCGATGAATATGGAGGCTTTCTCAGTGGTGGAGGTATCCCGGAGTTGCTGACCAACTTT AGCCCCGGCAAGCTGAAAAAGAAGAAGTCCAAAAGTCATAAACGCAAGAGCAATAAGGAGAGGAGGGTGGAGGAGGAAAATGAAATATCTTCCTCCTCAG ATAGTGGGGAATGGAGATCGAAGAAGGGAAACAGGAAGAAGAAGAAGATGAAGAAGGAAAAAGAAGAGAAATTTATTAAGGATTCAGATTCAGATCCATC CCATGATAATCTGGCAGTTGACAGGCGGCGGCGTTCTGAGAAAAGCAGACAAAGGAAGTATTCCTCCGAAGAAGATTCGGAGTATAAGAAGCGGCACAGG AGTAAAAGGAGGAGCAAGGAGGATAAGGATAGTTTATCATACGAACAAGACTTGGATGAGGAGGGGAGAAGAACTAAGAGTGGCCGGGAAACACGGCCGC ATTTGTCTCCTCACAGAAGCCGTCAAGAGAGTAGGCTTCCATCCGGTGACTCTGATTCTGACAGGCATTACAGAGGTAGTAGACATGGTGGTTCTTCGAG CAGCAGACGGCGTAAGCATTCATCAAACAATGATTTGGATTATGACGGCGACCGGTGGCGTTCACGGGGCTCTCATCATCGTGACAGGTATTACTGA
AA sequence Show only first row Show all	>Lus10035690 pacid=23147606 polypeptide=Lus10035690 locus=Lus10035690.g ID=Lus10035690.BGIv1.0 annot-version=v1.0 MEGEEGGGMRLSKRINNGEVDYKTKSGTAWSHNFLNQKPWHPLSYPNQRRKWIAEQTHAQHSRRSEEVAREYAQEQEFFRQTALISQKEKEKMEIMQAVS FMYVRPPGYNPESAKAAEIAEEDKKKQQDTAPTDPTDGQSESLPNKDPPVEEKKKRRPKDAFGRPLPTEEQFEVLKNAPRHDTGVATRSKPFGIEVRNVK CVRCGNFGHQSGDRECPLKDAIMPSEESRLKRDDPLTAIMAQMEPAEPLKWELKQQPGMSPPRGGFGADDPNQQIVAEDIFDEYGGFLSGGGIPELLTNF SPGKLKKKKSKSHKRKSNKERRVEEENEISSSSDSGEWRSKKGNRKKKKMKKEKEEKFIKDSDSDPSHDNLAVDRRRRSEKSRQRKYSSEEDSEYKKRHR SKRRSKEDKDSLSYEQDLDEEGRRTKSGRETRPHLSPHRSRQESRLPSGDSDSDRHYRGSRHGGSSSSRRRKHSSNNDLDYDGDRWRSRGSHHRDRYY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19190			zinc knuckle (CCHC-type) famil...		Lus10035690 [exp]	0	1
AT5G44170			S-adenosyl-L-methionine-depend...		Lus10018640 [exp]	1.7	0.8380
AT3G07260	FHA		SMAD/FHA domain-containing pro...		Lus10038196 [exp]	2.8	0.8302
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10013179 [exp]	6.0	0.8038
AT1G14450			NADH dehydrogenase (ubiquinone...		Lus10038124 [exp]	6.5	0.8118
AT1G17070			GC-rich sequence DNA-binding f...		Lus10002252 [exp]	6.5	0.7748
AT1G27050	HD	ATHB54	homeobox protein 54 (.1)		Lus10036708 [exp]	7.7	0.8003
AT5G27690			Heavy metal transport/detoxifi...		Lus10031495 [exp]	8.7	0.8294
AT2G47850	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10007941 [exp]	8.9	0.8033
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Lus10024901 [exp]	10.2	0.8229
AT4G28100			unknown protein		Lus10039742 [exp]	10.2	0.7559

Compare expression of checked genes

Lus10035690 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.