Plant FIBer expression Database

Lus10035691 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G31780 940 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037280
[exp]
934 / 0 AT1G31780 686 / 0.0 unknown protein
Lus10037281
[exp]
625 / 0 AT1G31780 530 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G236600
[exp]
1064 / 0 AT1G31780 996 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0295 Vps51 PF06419 COG6 Conserved oligomeric complex COG6
Representative CDS sequence
>Lus10035691 pacid=23147492 polypeptide=Lus10035691 locus=Lus10035691.g ID=Lus10035691.BGIv1.0 annot-version=v1.0
ATGGGGACGATGTCGCAGCAAGGACTAGCTCCAGGGCTGTCTAGGAAGCTGAAGAAAGTGCTCGAATGCCGTACCGACACTCCCGATCTGCTCTCTTCTC
TCACCACTCTCTCCAATTTCTACTCCGACAACACTCCCCAGGCACGCCGGAACCTTCGATCCACCATCGAGAAGCGCTCACTTCAGATCAACCTTGATTT
CCTTGAGTCTTCTCACTCTGCCCAGCAGGCGTTGGATCAAGTGGAGCAGGAAGTTAACGCTCTTGCTGAGTGCTGTGACAGGATTGGAAAGGCGTTGAAC
AGTTGTAGTGCTAGCACAGCTGATATTATCAGCACCACTGAGAGGTTGAAACAGGACCTGGAAGTTACCACACAGAGACAAGAGATAGTTTCATGCTTCC
TTCGTGACTATCAACTTTCGAGTGAAGAGATAAATGCTCTGAGGGAAGAAGACTTGAACGAAAATTTCTTCAAGGCACTCTCCCATGTACAAGAAATTCA
TTCCAATTGCAAAATATTGCTACGAACACATCACCAGCGAGCTGGGTTGGAGTTGATGGATATGATGGCTGTATACCAGGAAGGAGCATATGAGCGGCTG
TGCAGGTGGGTTCAAATAGAATGTAGGAAGCTGGGTGATGTGGACAATCCAGAAGTTGGTGATCTTTTAAAGACAGCAGTTCGGTGCCTCAAAGAAAGGC
CTGTCCTGTTCAAGTACTGTGCGGAAGAGGTAGCAAATATGAGGCACAATGCACTCTTCAGAAGATTTATTAGTGCTCTTACTCGTGGCGGACCTGGTGG
ACTACCAAGACCGATAGAGGTCCATGCTCATGATCCTTTACGATATGTAGGTGACATGCTGGGATGGTTGCATCAGGCATTGGCATCTGAGCGTGAACTT
GTTCTTGCATTACTTGATCCTGATCCTAGTACTGATGCTGAATCAACCATGGACCATGTTCCAAAGGTTTTGGAGAATGGTAATCGAAAGAAAGAATCAG
ATATGACATTCGTTCTGGACAGAGTTTTTGAAGGAGTTTGCCGACCTTTTAAAGTTAGAGTGGAACAAGTTTTGCAAGCCCAACCAAGTCTTATAGTAAC
ATATAAACTCAGCAATACTCTGGAATTTTACTGCTATACTGTATCAGATTTGCTCGGGAGAGATACAGCTCTCTGTAATACACTGTGGCTACTGAAGGAT
GCTACACAGAAGACTTTTTTTAACATTTTGAAAAGCCGTGGGGAAAAACTCTTGCGTTATCCTCCTCTTGTAGCTGCTGATCTTTCCCCTCCACAAGCTG
TGAGGGACGGTGTTTCTGTTCTACTTGATATAATTGAAACCCATAACAGCACGATGGTTCCTGATTCAGCCAAAACACCTGATTTTGGTCTGGTTATATC
AGCATTACTTGACCCCATAATTCAGATGTGTGAGCAAGCTGCTGAGGCACACAAGTCAAAGGGTAGTACGCATCTGTCAAGAAGGAGGAGCGCTGGCTCG
AGCCAAGACAATAAATCATCCGTCGAATCACTTTTGTCAAATGGAAACTCTGTGCCATCCTCTCAGAATACTGAAACACCTTCCAAAATATTCCTCGTCA
ACTGCTTGTGTGCCATTCAGCAACCGTTATCGAGGCACGAGATTGCTGCGGAATACGTGGATAAGCTCGGAGCACTAATAGATAAGCACATAAAAGATCT
CGTGGGGAGAGAAGTGAACGCCATTCTTCGAAGATGTGGCCTGTCGCAGCAAAAGATGGCATACTTTAGTAATTCAGCCGAGGATGATGCAGCATCAGAA
GCCCATCAGCCACTAGCAGAGGTCGAACTGACATCTCCAGCCGCCCTTGCAGAGTCCTTGAGGACTTTCTTCGGGCTTGTGCTGGGGAGTGAGAGTACAC
TCCCCGAGTTCGAGCAAATGCAGGTGCCCAAGTTGCGGTCAGAGACTTGCGTAAAGGTGGCCAGGTTGCTTGCCGAGACGTATGACCTTATTTATACAGC
GATAATGGATCCGAAGAATGGGTATGCTGAGCCGAAATCACTGGCGAGGCATCCTCCAGATCAAATAAGGACCATCTTGGGCATATAA
AA sequence
>Lus10035691 pacid=23147492 polypeptide=Lus10035691 locus=Lus10035691.g ID=Lus10035691.BGIv1.0 annot-version=v1.0
MGTMSQQGLAPGLSRKLKKVLECRTDTPDLLSSLTTLSNFYSDNTPQARRNLRSTIEKRSLQINLDFLESSHSAQQALDQVEQEVNALAECCDRIGKALN
SCSASTADIISTTERLKQDLEVTTQRQEIVSCFLRDYQLSSEEINALREEDLNENFFKALSHVQEIHSNCKILLRTHHQRAGLELMDMMAVYQEGAYERL
CRWVQIECRKLGDVDNPEVGDLLKTAVRCLKERPVLFKYCAEEVANMRHNALFRRFISALTRGGPGGLPRPIEVHAHDPLRYVGDMLGWLHQALASEREL
VLALLDPDPSTDAESTMDHVPKVLENGNRKKESDMTFVLDRVFEGVCRPFKVRVEQVLQAQPSLIVTYKLSNTLEFYCYTVSDLLGRDTALCNTLWLLKD
ATQKTFFNILKSRGEKLLRYPPLVAADLSPPQAVRDGVSVLLDIIETHNSTMVPDSAKTPDFGLVISALLDPIIQMCEQAAEAHKSKGSTHLSRRRSAGS
SQDNKSSVESLLSNGNSVPSSQNTETPSKIFLVNCLCAIQQPLSRHEIAAEYVDKLGALIDKHIKDLVGREVNAILRRCGLSQQKMAYFSNSAEDDAASE
AHQPLAEVELTSPAALAESLRTFFGLVLGSESTLPEFEQMQVPKLRSETCVKVARLLAETYDLIYTAIMDPKNGYAEPKSLARHPPDQIRTILGI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G31780 unknown protein Lus10035691
[exp]
0 1
AT5G45160 Root hair defective 3 GTP-bind... Lus10018282
[exp]
2.8 0.8966
AT1G19870 IQD32 IQ-domain 32 (.1) Lus10033167
[exp]
3.2 0.8601
AT1G58370 ATXYN1, RXF12 ARABIDOPSIS THALIANA XYLANASE ... Lus10037528
[exp]
5.2 0.8132
AT3G01780 TPLATE ARM repeat superfamily protein... Lus10014599
[exp]
6.6 0.8761
AT3G51050 FG-GAP repeat-containing prote... Lus10025977
[exp]
6.9 0.7868
AT5G45160 Root hair defective 3 GTP-bind... Lus10038333
[exp]
7.7 0.8373
AT1G59610 DRP2B, CF1, ADL... Dynamin related protein 2B, dy... Lus10030357
[exp]
8.8 0.8718
AT1G10950 AtTMN1 transmembrane nine 1 (.1) Lus10015463
[exp]
9.8 0.8615
AT3G57890 Tubulin binding cofactor C dom... Lus10023821
[exp]
10.8 0.8410
AT1G77140 ATVPS45, VPS45 vacuolar protein sorting 45 (.... Lus10028622
[exp]
10.9 0.8500

Lus10035691 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.