Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45370 477 / 9e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT4G19185 468 / 9e-165 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G45870 442 / 8e-155 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G75500 227 / 7e-71 WAT1 Walls Are Thin 1 (.1.2) AT3G18200 224 / 8e-70 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT3G53210 205 / 1e-62 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G09380 153 / 2e-42 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G30420 149 / 5e-41 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G01070 143 / 5e-39 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G07050 142 / 2e-38 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037284 [exp] 637 / 0 AT5G45370 475 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Lus10034776 [exp] 589 / 0 AT4G19185 525 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10033316 [exp] 577 / 0 AT4G19185 520 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10035694 [exp] 572 / 0 AT4G19185 465 / 4e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10038959 [exp] 238 / 3e-75 AT3G18200 497 / 2e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10027251 [exp] 234 / 3e-73 AT3G18200 493 / 2e-175 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10024301 [exp] 225 / 2e-69 AT1G75500 575 / 0.0 Walls Are Thin 1 (.1.2) Lus10010647 [exp] 174 / 1e-50 AT1G75500 492 / 6e-175 Walls Are Thin 1 (.1.2) Lus10028351 [exp] 169 / 7e-50 AT3G53210 311 / 1e-105 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G237100 [exp] 503 / 8e-179 AT4G19185 476 / 4e-168 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G233600 [exp] 237 / 2e-74 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.002G029100 [exp] 232 / 8e-73 AT1G75500 578 / 0.0 Walls Are Thin 1 (.1.2) Potri.015G042900 [exp] 230 / 4e-72 AT3G18200 476 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.007G017800 [exp] 202 / 2e-61 AT1G75500 414 / 4e-144 Walls Are Thin 1 (.1.2) Potri.015G073200 [exp] 175 / 5e-51 AT5G40240 254 / 4e-82 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.011G148400 [exp] 157 / 3e-44 AT5G07050 261 / 3e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G006600 [exp] 154 / 5e-43 AT1G09380 477 / 2e-169 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 154 / 1e-42 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 151 / 1e-41 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10035693 pacid=23147364 polypeptide=Lus10035693 locus=Lus10035693.g ID=Lus10035693.BGIv1.0 annot-version=v1.0 ATGGCTGCTTCGGCCGCCGTCGGAGGCGGTGGTTTGAACGAGAGAGAAACGCGGCGGAGAGCCCATATGTCAATGGCCCTGGTTCAGCTTATCAGTGGAG GTTATCATGTTATTACCAAAGTCGCTCTTAATGTCGGGATCAATCAACTCGTTTTCTGCGTCTTCCGCGATCTCCTTGCGCTCTCCATTCTCGCCCCCGT TGCCTTTCTCCGGGAGAAGAGGAATCGACCACCCATGACCAGGAGCTTGCTCATATCATTTTTCTTCCTTGGCTTAACTGGGATTTTTGGCAATCAGCTT TTGTTTCTTCTCGGTCTTAGCTACACAAATCCAACTTATGCTGCTGCAATACAGCCTTCAATACCAGTTTTCACATTTCTTTTGGCTGTGACGATGGGTA CAGAAAGAGTCAATTTGCTCAAAGCTGACGGTCGAGCGAAGATTCTAGGCACCGCCGTCTGTGTTTCTGGTGCCATTTTGATGGTTCTTTTTCGGGGTCC AGCTATCATTGGGCAGGCGGAATCTGACTTTGCATCCAGCGAAAGAAGAGCTAGGGATCAACCAGAGCCTGCAGGCTGGTTTGTATCCAACCTTCTGGAC CTTGGTTTTGGAACTTGGCATCTTGGGGTTCTTTGCTTGATTGGAAATTGTATGTGCATGGCAGCTTTTCTTGCCATTCAGGCTCCGGTTTTGGCAAAAT ATCCTGCCAGCATTTCAGTCACCGCATATTCTTATGGTTTTGGGGCTCTATTAATGGTAGTTGCAGCATTCGTCATGACTAATGAATCAACCAACTGGAG CTTGACTCAGTCGGAGTTATTGGCTGTGCTTTATGCAGGAATTATCGCATCTGCTCTCAACTATGGACTTTTAACGTGGTGCAACAAGATCATAGGGCCT GCTTTGGTAGCTCTCTACAATCCACTTCAACCTGCTGCATCCGCCCTTCTCTCAAGAATTTTCCTTGGAAGCCCTATTTATTTGGGAAGGTTCATAATAG GGGGATGCCTTATCATTGGTGGCCTCTATTTAGTGACATGGGGATCTTATAAAGAGGGAGAAGCTTCAGCTATTAACAAGTCATCCGATCCGCTAGTAAT GACCAAAGATGGAACTATAAACAAGGATATGTACCAGAGAGGACACATTGTCTCCAGTTTGTCGCTGTTAAAACCAGTGGATAAAGCTCTGGTTTAG
AA sequence Show only first row Show all	>Lus10035693 pacid=23147364 polypeptide=Lus10035693 locus=Lus10035693.g ID=Lus10035693.BGIv1.0 annot-version=v1.0 MAASAAVGGGGLNERETRRRAHMSMALVQLISGGYHVITKVALNVGINQLVFCVFRDLLALSILAPVAFLREKRNRPPMTRSLLISFFFLGLTGIFGNQL LFLLGLSYTNPTYAAAIQPSIPVFTFLLAVTMGTERVNLLKADGRAKILGTAVCVSGAILMVLFRGPAIIGQAESDFASSERRARDQPEPAGWFVSNLLD LGFGTWHLGVLCLIGNCMCMAAFLAIQAPVLAKYPASISVTAYSYGFGALLMVVAAFVMTNESTNWSLTQSELLAVLYAGIIASALNYGLLTWCNKIIGP ALVALYNPLQPAASALLSRIFLGSPIYLGRFIIGGCLIIGGLYLVTWGSYKEGEASAINKSSDPLVMTKDGTINKDMYQRGHIVSSLSLLKPVDKALV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45370			nodulin MtN21 /EamA-like trans...		Lus10035693 [exp]	0	1
AT1G64110		DAA1	DUO1-activated ATPase 1, P-loo...		Lus10028752 [exp]	1.4	0.9512
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Lus10007497 [exp]	4.0	0.9586
AT4G36790			Major facilitator superfamily ...		Lus10026037 [exp]	5.1	0.9382
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10013208 [exp]	5.9	0.9431
AT1G73140		TBL31	Plant protein of unknown funct...		Lus10042845 [exp]	6.0	0.9510
AT3G10700		GalAK	galacturonic acid kinase (.1)		Lus10014251 [exp]	6.1	0.9174
AT5G45370			nodulin MtN21 /EamA-like trans...		Lus10037284 [exp]	7.1	0.9404
AT1G09880			Rhamnogalacturonate lyase fami...		Lus10005979 [exp]	7.1	0.9471
AT5G01360		TBL3	TRICHOME BIREFRINGENCE-LIKE 3,...		Lus10027813 [exp]	8.9	0.9495
AT5G01890			Leucine-rich receptor-like pro...		Lus10014174 [exp]	9.6	0.9290

Compare expression of checked genes

Lus10035693 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.