Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19185 431 / 9e-151 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G45370 419 / 3e-146 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT3G45870 395 / 5e-137 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G75500 193 / 5e-58 WAT1 Walls Are Thin 1 (.1.2) AT3G18200 183 / 2e-54 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT3G53210 167 / 5e-48 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G30420 127 / 3e-33 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 124 / 5e-32 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08300 124 / 5e-32 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G44800 121 / 4e-31 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035693 [exp] 556 / 0 AT5G45370 502 / 1e-178 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Lus10034776 [exp] 529 / 0 AT4G19185 525 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10033316 [exp] 520 / 0 AT4G19185 520 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10037284 [exp] 520 / 0 AT5G45370 475 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Lus10038959 [exp] 190 / 7e-57 AT3G18200 497 / 2e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10027251 [exp] 187 / 2e-55 AT3G18200 493 / 2e-175 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10024301 [exp] 184 / 7e-54 AT1G75500 575 / 0.0 Walls Are Thin 1 (.1.2) Lus10010647 [exp] 165 / 3e-47 AT1G75500 492 / 6e-175 Walls Are Thin 1 (.1.2) Lus10041801 [exp] 140 / 2e-38 AT1G75500 365 / 6e-126 Walls Are Thin 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G237100 [exp] 473 / 3e-167 AT4G19185 476 / 4e-168 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G233600 [exp] 199 / 2e-60 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.002G029100 [exp] 196 / 2e-59 AT1G75500 578 / 0.0 Walls Are Thin 1 (.1.2) Potri.015G042900 [exp] 186 / 2e-55 AT3G18200 476 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.007G017800 [exp] 162 / 3e-46 AT1G75500 414 / 4e-144 Walls Are Thin 1 (.1.2) Potri.015G073200 [exp] 138 / 2e-37 AT5G40240 254 / 4e-82 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.011G148400 [exp] 136 / 1e-36 AT5G07050 261 / 3e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 132 / 6e-35 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 128 / 2e-33 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.010G209200 [exp] 127 / 3e-33 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10035694 pacid=23147429 polypeptide=Lus10035694 locus=Lus10035694.g ID=Lus10035694.BGIv1.0 annot-version=v1.0 ATGGCTGCTTCGGCCGCCGTCGCAGGCGGTGGTTTGAATGAGCGGCGGAGAGCCCATTCCTCAATGGCCCTTGTTCAGTTTATCACCGGAGGTTTTCATG TTGTTACCAAACTCGCTCTTAATGACGGGATCAATCAACTCGTTTTCTGCGTCTTCCGCGATCTCCTTGCCCTCTCCATTCTCGCCCCCGTTGCCTTTCT CCGGGAGAAGATTTTTGGCAACCAGCTTTTGTTTCTTCTCGGTCTTAGCTACACAAATCCAACTTATGCTGCTGCAATACAGCCTTCAGTACCAGTTTTC ACATTTCTTTTGGCTGTGACGATGGGCACAGAAAGAGTCAATTTGCTCAAAGCTGAAGGTCAAGCAAAGATTATAGGCACTGCCGTCTGTGTCTCTGGTG CCATATTCATGGTTCTTTTTCGAGGTCCAGCTGTCATTGGACAGGCGGAATTTGAATTTGCATCCAGCGAAATAAGGGCTAGGGGTCAACCAGATCCTGC AGGTTGGTTTTTATCCAACCTTCTGGGCGTTGGTTTAGGAACTTGGCATCTTGGGGTTCTATGCTTGATTGGAAATTGTATGTGCAAGGCAGCTTTTCTT GCCATCCAGGCTCCGGTTTTAGCAAAATATCCTGCCAGCATTTCTGTCACCGCATATTCTATTGGCTTTGGTGCTCTATTAATGGTGGTTACAGCATTCT TCATGACCAATGAATCAACGAACTGGAGCTTGACTCAGTCGGAGTTATTGGCTGTGCTTTATGCAGGAACTATCGCATCTGCTCTTAACTATGGACTTCA AACATGGTCCAACAAGATCATAGGGCCTGCTTTGGTAGCTCTCTACAATCCACTTCAACCTGCTGCATCCGCTCTTCTCTCACGAATTTTCCTTGGAAGC CCTATTTATTTGGGAAGCATAATAGGGGGATGCCTTATCATCGGTGGGCTTTATTTAGTGACATGGGGATCTTATAAAGAGAGAGAAGCTTCAGCTAACA AGTCATTCGATTCCGTTCCGCTAATAACGACCAAAGATGGAATTATAAACAAGGGAATGTACCAGATGGGACACGTTATCTCCAGTTTGTCGCTGTTGAA CCAGTGGAGTCAGCTGTGGTTTTGA
AA sequence Show only first row Show all	>Lus10035694 pacid=23147429 polypeptide=Lus10035694 locus=Lus10035694.g ID=Lus10035694.BGIv1.0 annot-version=v1.0 MAASAAVAGGGLNERRRAHSSMALVQFITGGFHVVTKLALNDGINQLVFCVFRDLLALSILAPVAFLREKIFGNQLLFLLGLSYTNPTYAAAIQPSVPVF TFLLAVTMGTERVNLLKAEGQAKIIGTAVCVSGAIFMVLFRGPAVIGQAEFEFASSEIRARGQPDPAGWFLSNLLGVGLGTWHLGVLCLIGNCMCKAAFL AIQAPVLAKYPASISVTAYSIGFGALLMVVTAFFMTNESTNWSLTQSELLAVLYAGTIASALNYGLQTWSNKIIGPALVALYNPLQPAASALLSRIFLGS PIYLGSIIGGCLIIGGLYLVTWGSYKEREASANKSFDSVPLITTKDGIINKGMYQMGHVISSLSLLNQWSQLWF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19185			nodulin MtN21 /EamA-like trans...		Lus10035694 [exp]	0	1
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10041481 [exp]	4.1	0.9277
AT5G19780		TUA5	tubulin alpha-5 (.1)		Lus10020281 [exp]	6.0	0.8730
AT2G39530			Uncharacterised protein family...		Lus10031874 [exp]	6.7	0.8837
AT4G19420			Pectinacetylesterase family pr...		Lus10033305 [exp]	6.9	0.8942
AT5G45970		ATRAC2, ATROP7,...	RHO-RELATED PROTEIN FROM PLANT...		Lus10025431 [exp]	11.0	0.8855
AT5G19780		TUA5	tubulin alpha-5 (.1)		Lus10005705 [exp]	11.1	0.8579
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10039899 [exp]	11.7	0.8997
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10013208 [exp]	11.8	0.8971
AT4G20050		QRT3	QUARTET 3, Pectin lyase-like s...		Lus10038370 [exp]	13.6	0.8972
AT5G47800			Phototropic-responsive NPH3 fa...		Lus10039099 [exp]	15.7	0.8558

Compare expression of checked genes

Lus10035694 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.