Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19180 582 / 0 GDA1/CD39 nucleoside phosphatase family protein (.1) AT2G02970 126 / 2e-30 GDA1/CD39 nucleoside phosphatase family protein (.1) AT1G14250 117 / 1e-27 GDA1/CD39 nucleoside phosphatase family protein (.1) AT1G14240 115 / 7e-27 GDA1/CD39 nucleoside phosphatase family protein (.1.2.3.4) AT1G14230 114 / 1e-26 GDA1/CD39 nucleoside phosphatase family protein (.1) AT3G04080 50 / 3e-06 ATAPY1 apyrase 1 (.1) AT5G18280 50 / 4e-06 ATAPY2 apyrase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037285 [exp] 932 / 0 AT4G19180 871 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10034777 [exp] 759 / 0 AT4G19180 879 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10033317 [exp] 741 / 0 AT4G19180 886 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10027686 [exp] 203 / 5e-57 AT4G19180 296 / 8e-92 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10039953 [exp] 194 / 2e-54 AT4G19180 267 / 1e-81 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10012825 [exp] 116 / 6e-27 AT2G02970 605 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10030470 [exp] 114 / 2e-26 AT2G02970 613 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10030471 [exp] 70 / 1e-12 AT2G02970 391 / 1e-133 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10006546 [exp] 60 / 5e-09 AT5G18280 647 / 0.0 apyrase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G236900 [exp] 682 / 0 AT4G19180 840 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.015G079900 [exp] 238 / 7e-70 AT4G19180 276 / 6e-84 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.008G086400 [exp] 112 / 1e-25 AT2G02970 635 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.010G169100 [exp] 111 / 1e-25 AT2G02970 606 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.009G157500 [exp] 88 / 7e-18 AT2G02970 330 / 9e-107 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.004G195600 [exp] 59 / 6e-09 AT5G21140 325 / 2e-108 embryo defective 1379 (.1) Potri.019G031200 [exp] 54 / 4e-07 AT3G04080 422 / 1e-144 apyrase 1 (.1) Potri.013G053700 [exp] 46 / 4e-05 AT5G18280 300 / 2e-98 apyrase 2 (.1.2) Potri.013G053500 [exp] 47 / 5e-05 AT5G18280 637 / 0.0 apyrase 2 (.1.2) Potri.019G031000 [exp] 44 / 0.0004 AT5G18280 617 / 0.0 apyrase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF01150 [flax] [poplar] GDA1_CD39 GDA1/CD39 (nucleoside phosphatase) family
Representative CDS sequence Show only first row Show all	>Lus10035695 pacid=23147485 polypeptide=Lus10035695 locus=Lus10035695.g ID=Lus10035695.BGIv1.0 annot-version=v1.0 ATGGTGTTTGATAAAATAGCTGCTGCGGTTTCCGCCGCGACCAGTCGTCTCTCGTTATCGGGATCAAACTCTGCTTCCGTCCCATATATGTCAACTGGGG TATCCCCACCACCAGCAGACCCTGTTGATCATCATGGATTTCCTTTCCCTAATCCTGCAAATAACAAGGCAAATTTGAGACTTTCTTCATCCTTACAAGA CTTCTCATCTTATAGGCGACTTGATCCTGAGGAAGCTGACCCTCTCAAGTTTGGGATTGATAAGAACATTCGTTTGTTACAGAGAGAGAATGCTGCTGCG AGTTTCTCGAAAGAGAAAGGACAACCAGCTGGGACGCCTTTTACACGAACGAAATGGGTTCATCCAAGTTCTATGTTGTTCTCGACTGTGGAAGTACGGG GACTCGAGTGTTTGTGTATCAGGCATCCATTGATAGCAAAAAACAGGGGAGTTTACCCGTCGTATTCAATTTTTCTTTATGCTACAGCTGGGGTACGCCG GCTTCCTAGATCAGATTCAACGTGGCTTTTAGATAAAGCATGGTCTATAATGAAGGAATCCCCTTTCTTGTGTCGAAGAGAATGGATTAAGATTATCAGT GGAATGGAGGAAGCATACTTTGGATGGATAGCTTTAAATTACAGAACTGATGTTTTGGGAGCTAGGCCAAAGAGACCAACATTTGGTGCTCTTGACCTGG GGGGCTCATCACTACAGGTCACATTTGAGGGTGATAAACAGTCCCGTAATAAGACTAACTTAAACCTCAGAATTGGAGCTGTTAATCATCGCCTCAGTGC GTATTCTCTTGCCGGGTATGGTTTAAATGATGCATTTGACAAGTCTGTTTTTCATATACTAAAGAGCCTTCCAGATGCTGGTCTAAGCAGGATTCCAGAA ATTAAGCACCCTTGCCTGCATTCTGGCTATAAGGAGGAATATATATGCTCCCTTTGTGGCTCTGACAACCAAGAAGGTGTAAGCCCTATTATCAGAGGAA GGCAGTTAGGCAAGGGAGCCAAGTCAGGAGTGACGGTTCAGCTTATTGGTGCTCCGAACTGGGAGGAATGCAGTGCTCTTGCTAAAAATGTTGTTAATTT GTCTAAATGGTCAACTGAAGGTCCGGCTTTAGACTGTGATCTGCAACCCTGTGCACTATCTGAGAGTCTGCCCCGCCCTTACGGCCAGTTCTATGCTATG TCTGGCTTTTTTGTGGTATACCGATTCTTTAACCTTTCTGCAGAAGCTTCCCTTGATGATGTATTGGAAAAAGGCAGAGCATTCTGCGAGAGGACTTGGA ATGTTGCAAAAACTAGTGTTTCTCCACAGCCATTTATTGAACAATACTGCTTTCGAGCACCATACATAGTATCATTACTGAGAGAGGGCTTACACATCAC TGATAATCAAATTGTTATTGGTTCTGGTAGTATAACTTGGACGCTTGGGGTTGCTCTGCTGGAAGCTGGGACAAATTTTTCAACTAGGTTGAGGCTTCAC AAGTACGATGTCTTCCATATGAACTTACATCCAATGGTTCTCCTTTCCATTTTGTGCATGTCAGTGTTCATCCTGCTGTGTGCATTATCATGTGTTGGCA AATGTGCTGGCAATTGGATTCCAAGGTTCTTCCGGAGACCATATCTTCCACTTTTCAGGCATAACAGTGCATCGACCACATCGGTTCTCAACATTCCATC TCCCTTCCGTTTCCAACGGTGGAGTCCTATTAATACTGGTGATGGAAGAGTGAAGGTGCCATTGAGTCCAACAGTTGCAGGAGGGGAACATCGACCATTC GGATTGGGACATGGTCTGGGTGGAAGTGGTGGGATCCAACTTATGGAACCTGCAACAATATACTCAGCAGGTGGCAGTGTTTCACATAGCTATTCCTCCA ACAGCTTGGGGCAGATGGTCGAGAGCGGAAACTTAGCTTCGTTTTGGTCCCCTCACAGAAGTCAGATGCGTCTCCAGAGCAGGAGATCACAGTCCAGAGA AGACCTCACTTCTTCCCTCGCCGATGCACATACAGTCAAGATCATGGCTGCAGAAGTCACTGGCCATCTTTCCGGAATCGATGCTTGTGTATTCTGA
AA sequence Show only first row Show all	>Lus10035695 pacid=23147485 polypeptide=Lus10035695 locus=Lus10035695.g ID=Lus10035695.BGIv1.0 annot-version=v1.0 MVFDKIAAAVSAATSRLSLSGSNSASVPYMSTGVSPPPADPVDHHGFPFPNPANNKANLRLSSSLQDFSSYRRLDPEEADPLKFGIDKNIRLLQRENAAA SFSKEKGQPAGTPFTRTKWVHPSSMLFSTVEVRGLECLCIRHPLIAKNRGVYPSYSIFLYATAGVRRLPRSDSTWLLDKAWSIMKESPFLCRREWIKIIS GMEEAYFGWIALNYRTDVLGARPKRPTFGALDLGGSSLQVTFEGDKQSRNKTNLNLRIGAVNHRLSAYSLAGYGLNDAFDKSVFHILKSLPDAGLSRIPE IKHPCLHSGYKEEYICSLCGSDNQEGVSPIIRGRQLGKGAKSGVTVQLIGAPNWEECSALAKNVVNLSKWSTEGPALDCDLQPCALSESLPRPYGQFYAM SGFFVVYRFFNLSAEASLDDVLEKGRAFCERTWNVAKTSVSPQPFIEQYCFRAPYIVSLLREGLHITDNQIVIGSGSITWTLGVALLEAGTNFSTRLRLH KYDVFHMNLHPMVLLSILCMSVFILLCALSCVGKCAGNWIPRFFRRPYLPLFRHNSASTTSVLNIPSPFRFQRWSPINTGDGRVKVPLSPTVAGGEHRPF GLGHGLGGSGGIQLMEPATIYSAGGSVSHSYSSNSLGQMVESGNLASFWSPHRSQMRLQSRRSQSREDLTSSLADAHTVKIMAAEVTGHLSGIDACVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19180			GDA1/CD39 nucleoside phosphata...		Lus10035695 [exp]	0	1
AT3G58050			unknown protein		Lus10029299 [exp]	4.0	0.8324
AT1G15130			Endosomal targeting BRO1-like ...		Lus10034634 [exp]	7.3	0.8247
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10025527 [exp]	8.5	0.8298
AT5G06460		ATUBA2 ,UBA 2	ARABIDOPSIS THALIANA UBIQUITI...		Lus10031862 [exp]	10.2	0.7946
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10019571 [exp]	15.2	0.7896
AT2G04620			Cation efflux family protein (...		Lus10013358 [exp]	15.3	0.8040
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10023546 [exp]	18.8	0.8060
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10025650 [exp]	23.0	0.7888
AT1G34260		FAB1D	FORMS APLOID AND BINUCLEATE CE...		Lus10006051 [exp]	23.3	0.7577
AT2G20370		AtMUR3, MUR3, K...	MURUS 3, KATAMARI 1, Exostosin...		Lus10024961 [exp]	23.5	0.7920

Compare expression of checked genes

Lus10035695 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.