Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19170 747 / 0 CCD4, NCED4 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) AT1G30100 339 / 6e-109 ATNCED5, NCED5 nine-cis-epoxycarotenoid dioxygenase 5 (.1) AT3G63520 333 / 2e-107 ATNCED1, ATCCD1, CCD1 carotenoid cleavage dioxygenase 1 (.1) AT1G78390 323 / 4e-102 ATNCED9, NCED9 nine-cis-epoxycarotenoid dioxygenase 9 (.1) AT4G18350 318 / 5e-101 ATNCED2, NCED2 nine-cis-epoxycarotenoid dioxygenase 2 (.1) AT3G14440 316 / 5e-100 SIS7, ATNCED3, STO1, NCED3 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) AT3G24220 304 / 1e-95 ATNCED6, NCED6 nine-cis-epoxycarotenoid dioxygenase 6 (.1) AT4G32810 94 / 4e-20 MAX4, CCD8, ATCCD8 MORE AXILLARY BRANCHING 4, carotenoid cleavage dioxygenase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037286 [exp] 317 / 3e-106 AT4G19170 263 / 9e-86 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10035700 [exp] 306 / 9e-101 AT4G19170 227 / 9e-71 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10019710 [exp] 315 / 6e-100 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10029513 [exp] 320 / 1e-99 AT3G63520 901 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10023673 [exp] 306 / 4e-96 AT3G24220 706 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10016410 [exp] 313 / 4e-95 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10008443 [exp] 293 / 7e-94 AT4G19170 315 / 1e-102 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10011750 [exp] 271 / 4e-83 AT3G24220 657 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10026185 [exp] 246 / 3e-74 AT3G14440 682 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G069100 [exp] 793 / 0 AT4G19170 812 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.019G093400 [exp] 791 / 0 AT4G19170 803 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.009G151900 [exp] 506 / 8e-174 AT4G19170 548 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.009G152200 [exp] 502 / 2e-172 AT4G19170 546 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.009G152300 [exp] 499 / 2e-171 AT4G19170 539 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.001G393800 [exp] 338 / 2e-108 AT3G14440 883 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Potri.011G112400 [exp] 331 / 6e-106 AT3G14440 868 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Potri.011G084100 [exp] 319 / 4e-101 AT1G30100 799 / 0.0 nine-cis-epoxycarotenoid dioxygenase 5 (.1) Potri.001G265400 [exp] 309 / 6e-98 AT3G63520 908 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Potri.003G176300 [exp] 310 / 1e-97 AT3G24220 718 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03055 [flax] [poplar] RPE65 Retinal pigment epithelial membrane protein
Representative CDS sequence Show only first row Show all	>Lus10035696 pacid=23147396 polypeptide=Lus10035696 locus=Lus10035696.g ID=Lus10035696.BGIv1.0 annot-version=v1.0 ATGGATTCCTTCTCTCCCTCTTTTTTCTCAAGATCAGTCTCTCCTCCTTCTACATGCCACCTCCGTTCCCCCTCTCCACGCCCACTCCAAATCTACTCTC TTCGAACTACTCAAGAAAAAACCGACACCGCCCAAAAACCACCACCGTCTCCTCCTAGATCACCCACCACCGCCACCAATACACGCCGATCTCAACCGCC TACTCAGGCCGCTAATCGCCGTTCAATTCGACCATTTCTGCCGCAGCAGCTTTCCATACCCTCACTAATGTTCAATGCGGTCGACGATTTCATCAACGCC TTCGTCGACCCACCGAACAAGCCCGCTACCGACCCTCGCTTCGTTCTCTCCGGCAATTTCTCCCCCGTCGATGAGCTCCCTCCCACCGACTGCCAGGTCA TCCACGGCTCCTTGCCTCCTTGCCTCGACGGGGCCTACATACGCAACGGCCCAAACCCTCAGTACCTGCCGCGTGGTCCCTACCACCTCTTCGATGGCGA CGGCATGCTCCACGCGCTGACTATCTCACGCGGCAGAGCCACGCTCTCCAGCCGCTATGTCAAGACCTACAAGTACGTCACCGAACGCGACGCCGGAGCT CCTCTCCTCCCTAATGTCTTCTCAGGCTTCAACGGCCTTACTGCCTCCGCCGCCCGCGGCGCCCTCTCCGCGGCGAGAATCGCCACCGGAATGTTCAATC CAGCAAACGGCATCGGTCTGGCGAACACAAGCTTGGCCTTCTTCGGCGATCGCCTGTTCGCTCTCGGAGAGTCGGATCTCCCTTATTCCGTCCGATTGAC GGAGAGTGGCGACGTTGAGACGCTCGGCCGCCACGATTTCGATGGGAATCTGGGGATGAGTATGACGGCGCACCCGAAAAGTGATCTCCAGACCGGAGAG ACCTTCGCCTTCAGGTATGGCCCGATGCCGCCGTTTCTAACTTATTTCCGGTTCGACGCTGACGGAAACAAGCAGCCGGATGTTCCTATCTTCTCGATGG TCAGCCCTTCTTTTCTCCACGATTTCGCGATCACGCAGAAATACGCCTTGTTTGCTGAGATCCAGATCGGGATGAACCCGATGGATATGGTGTTCGGAGG CGGGGTCGCCGTCGGAGCTGACCCGAAGAAGGTCCCTCGGGTGGGGATAATCCCGAGGTATGCGACGGACGAGTCGCAGATAAAGTGGTTTGAAGTGACC GGGTTCAACCCGATCCACTTGATTAACGCGTGGGATGAGGACGACGGGGACACCGTGGTTTTGGTAGCTCCGAACATCATGTCAGTGGAGCACACGATGG AGAGGCTTGATCTAGTCCATGCGCAGGTGGAGAAAGTCCGGATAGATTTGAAAACGGGGACGGTTTCGCGGGTCCCGATATCAGCCCGCAATCTGGATTT CGGGGTGGTGAATCCGGGTTACATCGGGAGGAAGAACCGGTTCGTTTACGCCGCAGTAGGGGATCCGATGCCGAAGATATCGGGGGTAGTGAAATTGGAC GTCGGAGATGAAATGGGGCGGGAAAGGATGGAGAGCACGGTTGCATGCAGGATGTTCGGGCCGGGTTGTTTCGGGGGGGAGCCATTTTTTGTGGCTAAGG ATCCGGAGGATCCGAATGCGGAGGAGGATGATGGGTATTTGGTGTCGTATGTTCACGACGAGATAAATGGGGAGTCGAAGTTTCTAGTTATGGACGCCAA GTCGCCGGAGCTTGAGATTGTTGCAGCGGTGAGACTTCCACGGCGGGTTCCGTACGGATTCCATGGGCTTTTCGTGAAAGAGTGCGACCTCCGAAAGTTA AGATAA
AA sequence Show only first row Show all	>Lus10035696 pacid=23147396 polypeptide=Lus10035696 locus=Lus10035696.g ID=Lus10035696.BGIv1.0 annot-version=v1.0 MDSFSPSFFSRSVSPPSTCHLRSPSPRPLQIYSLRTTQEKTDTAQKPPPSPPRSPTTATNTRRSQPPTQAANRRSIRPFLPQQLSIPSLMFNAVDDFINA FVDPPNKPATDPRFVLSGNFSPVDELPPTDCQVIHGSLPPCLDGAYIRNGPNPQYLPRGPYHLFDGDGMLHALTISRGRATLSSRYVKTYKYVTERDAGA PLLPNVFSGFNGLTASAARGALSAARIATGMFNPANGIGLANTSLAFFGDRLFALGESDLPYSVRLTESGDVETLGRHDFDGNLGMSMTAHPKSDLQTGE TFAFRYGPMPPFLTYFRFDADGNKQPDVPIFSMVSPSFLHDFAITQKYALFAEIQIGMNPMDMVFGGGVAVGADPKKVPRVGIIPRYATDESQIKWFEVT GFNPIHLINAWDEDDGDTVVLVAPNIMSVEHTMERLDLVHAQVEKVRIDLKTGTVSRVPISARNLDFGVVNPGYIGRKNRFVYAAVGDPMPKISGVVKLD VGDEMGRERMESTVACRMFGPGCFGGEPFFVAKDPEDPNAEEDDGYLVSYVHDEINGESKFLVMDAKSPELEIVAAVRLPRRVPYGFHGLFVKECDLRKL R

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Lus10035696 [exp]	0	1
AT5G65840			Thioredoxin superfamily protei...		Lus10011727 [exp]	1.4	0.9478
AT5G13720			Uncharacterised protein family...		Lus10019743 [exp]	3.5	0.9282
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10028616 [exp]	4.0	0.9264
AT2G36895			unknown protein		Lus10023001 [exp]	5.0	0.9229
AT2G46100			Nuclear transport factor 2 (NT...		Lus10036387 [exp]	6.0	0.9211
AT4G13150			unknown protein		Lus10025925 [exp]	6.3	0.9042
AT4G35250			NAD(P)-binding Rossmann-fold s...		Lus10003328 [exp]	6.5	0.9323
					Lus10032375 [exp]	7.2	0.9001
AT5G48370			Thioesterase/thiol ester dehyd...		Lus10002148 [exp]	7.7	0.8986
AT1G06460		ACD31.2, ACD32....	ALPHA-CRYSTALLIN DOMAIN 31.2, ...		Lus10007366 [exp]	9.9	0.9180

Compare expression of checked genes

Lus10035696 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.