Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31790 214 / 7e-65 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53360 104 / 1e-23 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13770 100 / 2e-22 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18520 97 / 2e-21 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G26782 95 / 1e-20 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 92 / 9e-20 MEF22 mitochondrial editing factor 22 (.1) AT1G18485 91 / 3e-19 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G34400 89 / 1e-18 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G22150 89 / 2e-18 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G09040 88 / 2e-18 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037288 [exp] 382 / 2e-132 AT1G31790 103 / 5e-25 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10037287 [exp] 202 / 6e-63 AT1G31790 83 / 2e-18 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041049 [exp] 99 / 4e-22 AT1G71460 796 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10001220 [exp] 98 / 2e-21 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 93 / 8e-20 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010473 [exp] 92 / 1e-19 AT3G22150 1007 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003806 [exp] 91 / 2e-19 AT3G22150 997 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038400 [exp] 91 / 4e-19 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032091 [exp] 90 / 7e-19 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G164900 [exp] 99 / 8e-22 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G051300 [exp] 97 / 2e-21 AT3G13770 908 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G170300 [exp] 96 / 5e-21 AT4G18520 717 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G047600 [exp] 95 / 1e-20 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G152000 [exp] 95 / 1e-20 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.001G066100 [exp] 95 / 1e-20 AT5G13270 977 / 0.0 REQUIRED FOR ACCD RNA EDITING 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G007800 [exp] 95 / 2e-20 AT3G22150 1088 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G208000 [exp] 94 / 3e-20 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G111300 [exp] 91 / 2e-19 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G322100 [exp] 90 / 6e-19 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10035697 pacid=23147638 polypeptide=Lus10035697 locus=Lus10035697.g ID=Lus10035697.BGIv1.0 annot-version=v1.0 ATGGCGATTTCAACTAAATCGGTGACAGGTATCAGAAATCTGCACTCAACTTACTCCTCCTGCTGCAAACCCAACAACCAGAAACCATCATCCAGCTCCC GACTACACTTACAGCCGCCACCGCTCAGAACACCATCAGCTCCACTGCAACACCACCATTTGCATCTAAATCATCAGAAACCCACGCCGCCGTCCACCCT AGATTCTCTTTCTCGGCGGCCAACCAGGAGAAAACCCGCCGTCTCCACCTCCGATATACTTCGTCTGTTCCACAGCTTAGATCTTCCTTTACTACCCGAC CTCTATGTTTCCCTCGTCAAAGAATGCACCTTCCGACGCGACTCAGTCTCTGCTCTCCGACTCCACACCCAGTACTTCACCCATCGACAATCGTCTGCTG ATTCACCTGTCCTCCTCCTCAACCGTCTGCTCCTCATGCACGTTTCTTGTGGCCACTTGGAAATCGCCCGCCAACTGTTCGACGAAATTCCTCCACTTGA TAAGCATGTCATCTCTTGGGCCATACTCGTCAGTGCTTACTCCCACAACGCTCAGTATGATGAGACTATTCTCCTCTTCTTGCAAATGCTGCGTGATGAT GATGACCACTACCACCAGTTGCTGCAGTTTCCCAAGGTTGCTATGGTTTCCGTTCTCAAGGCATGCATGTGCGCTGATAACAATGGCTTAGGGAAGCAGC TTCATGGGCTATTGATAAAGTTTAGTCCCACTTTTGAAGGCGATCTTGGTGCCTCTTTGGCTGATTTCTATGGGAATTTTGATCATGGAGTTAATCATCT CTCACCACAGTGTAATAACCAATCTGTCTGGGCGAGTAAGATTGAAAATAACTATAAAGAAGGCCGCTTTGCAGAAGTAATCGAGGATTTTAAGCGGATG GGAAGTGCGGGCATATGCAGAAGCGACAGCGCTTTATTATGTACTGTGATGAAAGCTTGCGGGAAGATGGACGATGGTGGAAGTACTGCTCGACAACTCC ATGCAGTTGCCATCAAATTACAGGGGGGTTTGAATGGGAAGCTTGTTATGATCCAGTGTGGATTGATTAAGATGTACGGTGGGTGTGGGTTGGTCCGGTA TTCTGAACAGGTATTCGACAAGACGCTCACTGACAAGAAGAGATGTGATGCACATTGGAATGCAATGCTAATGTCCTATTTGCAGAATGGGTCATATGTG GAGGCGTTCAAGCTTCTTTACAAGATGAAAGCAGCTGCAGTAGAGGTGACTGAGTCATTGGTAAACAAAGTCAGAATTGCTTGTGGCACTGCTACTACAC TTGCAAACTAG
AA sequence Show only first row Show all	>Lus10035697 pacid=23147638 polypeptide=Lus10035697 locus=Lus10035697.g ID=Lus10035697.BGIv1.0 annot-version=v1.0 MAISTKSVTGIRNLHSTYSSCCKPNNQKPSSSSRLHLQPPPLRTPSAPLQHHHLHLNHQKPTPPSTLDSLSRRPTRRKPAVSTSDILRLFHSLDLPLLPD LYVSLVKECTFRRDSVSALRLHTQYFTHRQSSADSPVLLLNRLLLMHVSCGHLEIARQLFDEIPPLDKHVISWAILVSAYSHNAQYDETILLFLQMLRDD DDHYHQLLQFPKVAMVSVLKACMCADNNGLGKQLHGLLIKFSPTFEGDLGASLADFYGNFDHGVNHLSPQCNNQSVWASKIENNYKEGRFAEVIEDFKRM GSAGICRSDSALLCTVMKACGKMDDGGSTARQLHAVAIKLQGGLNGKLVMIQCGLIKMYGGCGLVRYSEQVFDKTLTDKKRCDAHWNAMLMSYLQNGSYV EAFKLLYKMKAAAVEVTESLVNKVRIACGTATTLAN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31790			Tetratricopeptide repeat (TPR)...		Lus10035697 [exp]	0	1
AT3G15395			unknown protein		Lus10027849 [exp]	3.2	0.7743
AT5G66360		DIM1B	adenosine dimethyl transferase...		Lus10041797 [exp]	3.5	0.7866
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10027455 [exp]	3.5	0.8168
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10022499 [exp]	4.2	0.8353
AT1G64810		APO1	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10039122 [exp]	4.7	0.8275
AT2G41475			Embryo-specific protein 3, (AT...		Lus10043273 [exp]	6.9	0.7598
AT3G25580			Thioredoxin superfamily protei...		Lus10026602 [exp]	11.4	0.7562
AT4G15720			Tetratricopeptide repeat (TPR)...		Lus10006517 [exp]	13.4	0.7395
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10027365 [exp]	17.9	0.7619
AT3G11460			Pentatricopeptide repeat (PPR)...		Lus10022702 [exp]	21.9	0.7457

Compare expression of checked genes

Lus10035697 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.