Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037289 [exp] 171 / 6e-51 AT5G02920 61 / 4e-10 F-box/RNI-like superfamily protein (.1) Lus10000650 [exp] 89 / 4e-21 ND / Lus10029083 [exp] 72 / 1e-14 AT1G67390 54 / 6e-08 F-box family protein (.1) Lus10034290 [exp] 66 / 1e-12 AT5G02910 53 / 2e-07 F-box/RNI-like superfamily protein (.1.2) Lus10029003 [exp] 66 / 2e-12 AT3G49030 57 / 3e-08 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Lus10028940 [exp] 60 / 6e-11 ND / Lus10003695 [exp] 59 / 8e-11 ND / Lus10034430 [exp] 56 / 3e-09 ND / Lus10001581 [exp] 47 / 3e-06 AT4G21120 915 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035698 pacid=23147575 polypeptide=Lus10035698 locus=Lus10035698.g ID=Lus10035698.BGIv1.0 annot-version=v1.0 ATGGATAAGTTTCGAAGGGAGAATGTTTTTGAAATGCGGCCGCACCAAATTTCATTGTCAGCTCCCAATGTAAAAAACTTAGACTTTGAACCCCTGGCTG AACTTTGGGGCAGAGAATTCAGTGAGTCGATTTCAAAGTTGCCATCTCTCGAGTCTCTCGTCTTCAATCCGTTGAGCATCCGAGGCAGTGATGTGCTAGT AACTTTGGAACAGCATACTCCCGAGATGGAGTTTGAGATTGATGCACCTAATCTAGTGGCTCCTAGCTGCCGATGTGTAGTTGCTTCTTCGATTAGATCA TTCATGATAACAAAAGGTTGGTTTATTGACTTGAGGGAGCGTCTCATGTCATTAGCTACTTCATTCCGCCACATGATTTTCGAGTTGGATTTCCCGTTTT TCCATAAGATTGAGATGAAAAACCTTCAGAAATGTTGCAACAACGGAAAGTGTAAGTTCCTGAAAATAGTTTCAGCTCCAAGTGTGTCGGTGAACTTAGC AGCAAAACACTTAGAGGAGTTGATTCTAAAGTTCACCATCTCTGGAATCTCTCGACTTCAATGCGTCATTCATCGCAGGCCTTGTAAAGCTAAGGATTTC GGCTCGTAG
AA sequence Show only first row Show all	>Lus10035698 pacid=23147575 polypeptide=Lus10035698 locus=Lus10035698.g ID=Lus10035698.BGIv1.0 annot-version=v1.0 MDKFRRENVFEMRPHQISLSAPNVKNLDFEPLAELWGREFSESISKLPSLESLVFNPLSIRGSDVLVTLEQHTPEMEFEIDAPNLVAPSCRCVVASSIRS FMITKGWFIDLRERLMSLATSFRHMIFELDFPFFHKIEMKNLQKCCNNGKCKFLKIVSAPSVSVNLAAKHLEELILKFTISGISRLQCVIHRRPCKAKDF GS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10035698 [exp]	0	1
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Lus10001258 [exp]	7.9	0.7475
AT1G17930			Aminotransferase-like, plant m...		Lus10033415 [exp]	12.2	0.6951
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Lus10036519 [exp]	13.9	0.7026
AT1G27680		APL2	ADPGLC-PPase large subunit (.1...		Lus10007209 [exp]	17.4	0.6889
AT5G38460			ALG6, ALG8 glycosyltransferase...		Lus10033554 [exp]	18.1	0.6117
AT5G44510		TAO1	target of AVRB operation1 (.1)		Lus10001537 [exp]	20.1	0.7155
AT3G62710			Glycosyl hydrolase family prot...		Lus10034128 [exp]	21.2	0.6380
AT1G27340			Galactose oxidase/kelch repeat...		Lus10003118 [exp]	23.3	0.6289
AT1G64870			unknown protein		Lus10002022 [exp]	25.1	0.6531
AT2G40920			F-box and associated interacti...		Lus10001579 [exp]	25.4	0.6507

Compare expression of checked genes

Lus10035698 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.