Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45880 460 / 2e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G19840 51 / 6e-07 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT3G20810 51 / 7e-07 JMJ30, JMJD5 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037290 [exp] 228 / 2e-75 AT3G45880 164 / 7e-51 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10000493 [exp] 63 / 2e-10 AT5G19840 545 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10029343 [exp] 49 / 5e-06 AT5G06550 730 / 0.0 unknown protein Lus10016202 [exp] 49 / 5e-06 AT5G06550 724 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G233200 [exp] 504 / 2e-180 AT3G45880 404 / 3e-141 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.009G025400 [exp] 496 / 4e-177 AT3G45880 417 / 2e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G215200 [exp] 62 / 3e-10 AT5G19840 579 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.001G016200 [exp] 56 / 1e-08 AT3G20810 540 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035699 pacid=23147622 polypeptide=Lus10035699 locus=Lus10035699.g ID=Lus10035699.BGIv1.0 annot-version=v1.0 ATGTCGCAGGAGAGGAAAACAATAGAATCTCTGTGGGAAGAGGTGAGGGAGCTAAGTTTAGGCACTTCAGTAGAACGACTGGATTCGCCTCCGTCTCCGC TTCAGTTCCTCCGCCGCTTCGTCTCTGCCAACAAACCCTGCATCATCTCCAACGCCGTTCCCCACTGGGCCGCCCTCTCCCTCTGGCCAGACCACTCTTA TCTCTCCCAATCCCTCACCGATTCCCTCGTCTCTCTCCACCTGACCCCCCATGGCCGCGCCGATTCCCTCGTCCCCCACCCTTCCGATTCCGATTCTCCT ATTTGCTTCGCCTCCGCTCACGTGGAACGCGTCCCTTTCCCTAGGGCTCTACAATTCGTTCTCGACAGCGGAAGCAGCAAGGATCCGCCGGTGGCGTATT TGCAGCAGCAGAACGATTGCTTCCGGGAGGAGTACTCGGCGTTGAGCGGCGACTGTGATTCCGACATACCTTGGGCGACGGAGGCTCTCGGATGTCTGCC GGAGGCTGTGAATCTTTGGATTGGAAACCACTTGTCGGAGACCTCTTTCCACAAGGACCACTACGAGAATCTGTACGCCGTCGTCTCCGGTGAGAAGCAT TTCTTGTTGCTCCCTCCAACTGACGTTCACCGGATGTACATTCGCGATTATCCGGCTGCTCAGTATTCTTATGATCTGGATAATGGCGGAGAGTTTAAGT TGGAGATGGATGAACCGGCTAGGAATGTGCCTTGGTGCAGTGTGAATCCTTACCCTACACCAGAGACTGAAGAAGCAGAAAGGTCAAAGTACCCATTGTA TTTCAACGGATCAAAGCCATTTCAATGTACTGTCAAAGCAGGAGAGATTCTTTACCTGCCTAGTATGTGGTTTCATCATGTTCGTCAGAGTCCAGACGAG AAAGGATGCACTATTGCCGTAAACTACTGGTACGACATGCAGTTTGATATCAAGTATGCTTATTTCAATTTCTTGCAATCAATTCATCATCGTTCCCCGA ATACATTGAGGGATTCGGATTCTCCCGAGTCTGATTTGGAGGATGGTGATGAAAATGAAGGATAA
AA sequence Show only first row Show all	>Lus10035699 pacid=23147622 polypeptide=Lus10035699 locus=Lus10035699.g ID=Lus10035699.BGIv1.0 annot-version=v1.0 MSQERKTIESLWEEVRELSLGTSVERLDSPPSPLQFLRRFVSANKPCIISNAVPHWAALSLWPDHSYLSQSLTDSLVSLHLTPHGRADSLVPHPSDSDSP ICFASAHVERVPFPRALQFVLDSGSSKDPPVAYLQQQNDCFREEYSALSGDCDSDIPWATEALGCLPEAVNLWIGNHLSETSFHKDHYENLYAVVSGEKH FLLLPPTDVHRMYIRDYPAAQYSYDLDNGGEFKLEMDEPARNVPWCSVNPYPTPETEEAERSKYPLYFNGSKPFQCTVKAGEILYLPSMWFHHVRQSPDE KGCTIAVNYWYDMQFDIKYAYFNFLQSIHHRSPNTLRDSDSPESDLEDGDENEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45880			2-oxoglutarate (2OG) and Fe(II...		Lus10035699 [exp]	0	1
AT5G59090		ATSBT4.12	subtilase 4.12 (.1.2.3)		Lus10040253 [exp]	11.5	0.7992
					Lus10003899 [exp]	18.1	0.7822
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10002638 [exp]	20.4	0.8005
AT5G12230		MED19A	unknown protein		Lus10017449 [exp]	27.6	0.7640
AT1G79840	HD	GL2	GLABRA 2, HD-ZIP IV family of ...		Lus10011440 [exp]	30.4	0.7758
AT4G16700		PSD1	phosphatidylserine decarboxyla...		Lus10007807 [exp]	34.3	0.7621
AT5G62140			unknown protein		Lus10038887 [exp]	45.2	0.7656
AT1G18390			Protein kinase superfamily pro...		Lus10027117 [exp]	45.2	0.7752
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Lus10020104 [exp]	55.9	0.7726
AT5G44620		CYP706A3	"cytochrome P450, family 706, ...		Lus10024575 [exp]	59.2	0.6888

Compare expression of checked genes

Lus10035699 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.