Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19170 207 / 4e-63 CCD4, NCED4 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) AT4G18350 100 / 3e-24 ATNCED2, NCED2 nine-cis-epoxycarotenoid dioxygenase 2 (.1) AT1G30100 95 / 3e-22 ATNCED5, NCED5 nine-cis-epoxycarotenoid dioxygenase 5 (.1) AT3G63520 94 / 8e-22 ATNCED1, ATCCD1, CCD1 carotenoid cleavage dioxygenase 1 (.1) AT3G14440 92 / 3e-21 SIS7, ATNCED3, STO1, NCED3 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) AT3G24220 92 / 4e-21 ATNCED6, NCED6 nine-cis-epoxycarotenoid dioxygenase 6 (.1) AT1G78390 87 / 1e-19 ATNCED9, NCED9 nine-cis-epoxycarotenoid dioxygenase 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035696 [exp] 317 / 2e-105 AT4G19170 813 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10029512 [exp] 100 / 1e-26 AT3G63520 211 / 9e-67 carotenoid cleavage dioxygenase 1 (.1) Lus10008443 [exp] 100 / 1e-24 AT4G19170 315 / 1e-102 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10029513 [exp] 95 / 3e-22 AT3G63520 901 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10016410 [exp] 94 / 6e-22 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10011750 [exp] 93 / 2e-21 AT3G24220 657 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10019710 [exp] 92 / 3e-21 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10023673 [exp] 89 / 3e-20 AT3G24220 706 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10042482 [exp] 52 / 1e-07 AT1G78390 374 / 4e-125 nine-cis-epoxycarotenoid dioxygenase 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G069100 [exp] 231 / 3e-72 AT4G19170 812 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.019G093400 [exp] 229 / 2e-71 AT4G19170 803 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.009G152000 [exp] 142 / 6e-41 AT4G19170 158 / 5e-44 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.009G151900 [exp] 146 / 1e-40 AT4G19170 548 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.009G152300 [exp] 145 / 4e-40 AT4G19170 539 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.009G152200 [exp] 142 / 5e-39 AT4G19170 546 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.011G084100 [exp] 95 / 3e-22 AT1G30100 799 / 0.0 nine-cis-epoxycarotenoid dioxygenase 5 (.1) Potri.011G112400 [exp] 94 / 9e-22 AT3G14440 868 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Potri.001G393800 [exp] 93 / 1e-21 AT3G14440 883 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Potri.001G265600 [exp] 87 / 2e-19 AT3G63520 878 / 0.0 carotenoid cleavage dioxygenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03055 [flax] [poplar] RPE65 Retinal pigment epithelial membrane protein
Representative CDS sequence Show only first row Show all	>Lus10035700 pacid=23147592 polypeptide=Lus10035700 locus=Lus10035700.g ID=Lus10035700.BGIv1.0 annot-version=v1.0 ATGGATTCCTTCTCTACATCCTATATCTCGAGATCAGTCTCTCCTCCTTCTACATTGCACCTCCGTCCACTCCAAATACACTCTCTTCCAATTACTCAAG AAAAAACCCACACCGCCGGCAAACCACCACCTTCTCCTCCTACCCAATCTCCACCGCCTAGTAAGACCACCACCAATCGCCGTTCAATTCGGCCTTTTGT GCCACAACAGCTGTCCATACCCTCACTAATGTTCAATTCCGTCGACGATTTCATCAACACCTTCGTCGACCCACCAAACAAGCCCGCTACCGACCCCCGC TTCGTCCTCTCCGGCAACTTCTCCCCTGTCGACGAGCTCCCTCCCACCGAGTGCCACGTCATACACTGCTCCTTACCTCCATGCCTCGATGGGGCCTACA TACGTAACGGCCCAAACCCACAGTACCCGCCCCGCGTTCCCTACCACCACTTTGATGGCGACGGTATGCTCCACGCGCTCACCATCTCAAGAGGGAAAGC CACGCTCTCTAGCCGTTATGTCAAGACCTACAAGTACATCACCGAACGCGACGCCGGAGCTCCCATCCTCCCTAATCTCTTTTCCGGCTTCAACGGCCTG ACCGCCTCCGCGGCCCTTGCTGCCCTTTGTGCCGCGAAAATCGCCACCGTAATGTTTAATCCAGCCAACGGCATCGGTTTGGTTAACACAAGCCTGGACT TAAATCATTACTAA
AA sequence Show only first row Show all	>Lus10035700 pacid=23147592 polypeptide=Lus10035700 locus=Lus10035700.g ID=Lus10035700.BGIv1.0 annot-version=v1.0 MDSFSTSYISRSVSPPSTLHLRPLQIHSLPITQEKTHTAGKPPPSPPTQSPPPSKTTTNRRSIRPFVPQQLSIPSLMFNSVDDFINTFVDPPNKPATDPR FVLSGNFSPVDELPPTECHVIHCSLPPCLDGAYIRNGPNPQYPPRVPYHHFDGDGMLHALTISRGKATLSSRYVKTYKYITERDAGAPILPNLFSGFNGL TASAALAALCAAKIATVMFNPANGIGLVNTSLDLNHY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Lus10035700 [exp]	0	1
AT2G37880			Protein of unknown function, D...		Lus10021495 [exp]	1.0	0.9442
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10002907 [exp]	6.7	0.9165
AT1G67623			F-box family protein (.1)		Lus10030790 [exp]	7.1	0.8955
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10014177 [exp]	8.5	0.8975
AT1G24735			S-adenosyl-L-methionine-depend...		Lus10021804 [exp]	8.8	0.9167
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10004629 [exp]	9.3	0.8736
AT5G57820			zinc ion binding (.1)		Lus10007703 [exp]	11.9	0.8666
AT4G30200		VEL1, VIL2	VIN3-Like 2, vernalization5/VI...		Lus10040339 [exp]	12.1	0.8617
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10024216 [exp]	12.6	0.9129
					Lus10007903 [exp]	13.9	0.8618

Compare expression of checked genes

Lus10035700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.