Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79600 925 / 0 Protein kinase superfamily protein (.1) AT3G24190 383 / 1e-121 Protein kinase superfamily protein (.1) AT1G71810 372 / 2e-118 Protein kinase superfamily protein (.1) AT4G31390 358 / 1e-113 Protein kinase superfamily protein (.1.2) AT5G24970 342 / 3e-106 Protein kinase superfamily protein (.1.2) AT2G39190 246 / 3e-70 ATATH8 Protein kinase superfamily protein (.1.2) AT3G07700 238 / 3e-68 Protein kinase superfamily protein (.1.2.3) AT5G64940 232 / 1e-65 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT5G05200 142 / 1e-35 Protein kinase superfamily protein (.1) AT4G24810 127 / 5e-31 Protein kinase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037291 [exp] 771 / 0 AT1G79600 759 / 0.0 Protein kinase superfamily protein (.1) Lus10017924 [exp] 386 / 9e-124 AT1G71810 858 / 0.0 Protein kinase superfamily protein (.1) Lus10020152 [exp] 337 / 5e-105 AT4G31390 1041 / 0.0 Protein kinase superfamily protein (.1.2) Lus10020103 [exp] 330 / 2e-102 AT5G24970 920 / 0.0 Protein kinase superfamily protein (.1.2) Lus10032616 [exp] 333 / 1e-98 AT3G23940 1162 / 0.0 dehydratase family (.1.2) Lus10043132 [exp] 332 / 3e-98 AT3G23940 1148 / 0.0 dehydratase family (.1.2) Lus10026952 [exp] 268 / 6e-76 AT4G31390 878 / 0.0 Protein kinase superfamily protein (.1.2) Lus10006363 [exp] 250 / 2e-72 AT3G07700 1066 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10036522 [exp] 244 / 1e-69 AT2G39190 940 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G000100 [exp] 947 / 0 AT1G79600 949 / 0.0 Protein kinase superfamily protein (.1) Potri.002G061000 [exp] 385 / 4e-123 AT1G71810 915 / 0.0 Protein kinase superfamily protein (.1) Potri.001G050700 [exp] 384 / 7e-122 AT3G24190 1233 / 0.0 Protein kinase superfamily protein (.1) Potri.006G275600 [exp] 356 / 7e-113 AT4G31390 1058 / 0.0 Protein kinase superfamily protein (.1.2) Potri.018G014000 [exp] 334 / 8e-104 AT5G24970 973 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G221000 [exp] 259 / 7e-75 AT2G39190 965 / 0.0 Protein kinase superfamily protein (.1.2) Potri.007G082500 [exp] 240 / 1e-68 AT5G64940 1081 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.005G083200 [exp] 236 / 3e-67 AT5G64940 1068 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.014G168600 [exp] 228 / 2e-64 AT3G07700 1038 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.019G061300 [exp] 138 / 3e-34 AT5G05200 830 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF03109 [flax] [poplar] ABC1 ABC1 family
Representative CDS sequence Show only first row Show all	>Lus10035701 pacid=23147646 polypeptide=Lus10035701 locus=Lus10035701.g ID=Lus10035701.BGIv1.0 annot-version=v1.0 ATGAGCCTCGTTTCCACCGGCGGCAATTCCCTGGCCCCGGGGCTCTTCCCCAACTTCAGAACCACTCATCCGCCCCTCCGACGAAGACCTGCTCCGCCGT CCTTGAATTCCGCGCGCGCCGCTATCGTCGAGTCTAGGCCGGCCAGAATATCGGTGCCGCCTTCCTTAAGAAATGGGGCAGCTAATAGTAACGGTCAACT TGTTCTTGTGTCCGCTGGCGGAGGAGGTGGTGGAGGAGGAGATCGAGCTGAAGATATTCAGGCCGAGGCTAGGGCCATGGGTCGCGCAGTCAATGCTCCT GTTTTCACTCCCGAGCTTATTGCTACCAAATTTGGTCCCAGGCCTATCCAGGTTGTGAGGCGGACTCTTGAGATTTTGTTAACCCTAGGTTCATTTGGCT TGAAGCTGTGGCTGGACGGCAGAAATGGAGTGTTCGACCAGAACAAGAGAATCCGAGCGACGGAGCTGAGGAAGATATTCACTCGATTGGGACCGACTTT CGTCAAATTAGGTCAGGGACTCTCCACCAGGCCTGACATCTGCCCTCCTGAGTTTCTAGAGGAGCTCGCTGAACTTCAGGATGACTTGCCTACATTTCCC GATGACGAAGCATTTGCGTGCATCGAGACCGAGTTGGGGGTGTCTCTCAACTCTATTTACTCAGCAATTTCACCTTCTCCAATTGCGGCTGCCAGTCTAG GCCAAGTTTACAAAGCTCAACTCAAGTCTTCTGGGCAGACTGTTGCTGTCAAGGTCCAACGCCCTGGTATCGAGGAAGTTATCGGTCTTGACTTCTACCT CGTCAGGGGACTTGGCGGCTTGATTAACAAATATGTCGATTTCATCACCAGCGATGTTGTTGCTCTTATTGATGAATTCGCCTGCAGAGTTTATCAGGAG CTCAACTATGTTCAGGAGGGGAAAAACGCTAGGAGGTTTAAGAAGTTGTATGCTGAAAAGGAAGATATACTAGTTCCTGATATATTCTGGGACTATACGA GTGGCAAAGTGTTGACGATGGAATGGGTTGATGGTGTTAAATTAAGTCAACACGAGGCTATTGAGAGCCAGGGTCTGAAAGTTCTTGATCTTGTGAATAC AGGGATACAATGCAGCCTCAGGCAGCTCCTTGAATATGGATATTTCCATGCAGATCCTCACCCTGGTAACCTGCTGGCGACACCAGAAGGAAAGCTGGCT TTTCTTGATTTTGGGATGATGAGCGAGACCCCAGAAGAAGCAAGATTTGCAATAATTGGCCACGTTGTACACTTGGTTAACAGAGATTATGAAGCTATGG CTCAGGATTACTACGCTCTCAAATTCTTGTCAAGAGATGTTGATGTCACCCCAATTGTTCCAGCACTACAGAATTTCTTTGATGATGCTCTCAATTACAC TGTCAGTGAACTCAACTTCAAAACACTGGTAGATGGACTGGGAGCTGTTTTCTATCAGTATCCCTTTAATGTCCCCGCATATTATGCATTGATATTGAGA TCCCTCACCGTGCTTGAAGGATTGGCCCTTAATGCCGATCCAAATTTCAAGGTGCTGGCTGCTTCATACCCTTACTTTGCAAAAAGGCTTCTCACAGATC CGAATCCATATCTCAGAGATGCTCTTATTGAGCTACTTTTCAAAGATGGGAGGTTTAGGTATACGTATTCATCCACCACCCCCCCCCCCTCCCCTCGCGA GCTACTTTTCAAAGATGGGAGGTTTAGGTGGAAGAGACTTGAAAACTTACTTGTTCAGGGAAGTAAAGATAGAGATTTCTCAGCAAAGGATGCGTTACAG CCAGTGTTGAAACTACTGTTGGGGGAAGATGGGGAAGAGTTGCGAAGCTTGGTGGTCAAGGAAGCTGTATACGTATCAGAAGCTGTAGTTCTGACGTCAG TTGTTGATACCTACAACTCCATACCACCCCCCTTACGGCTTCCAATCCTAAATGGGAATGGAAGAGGGCCTCTTACGATGATGAGCGAAATTGAATTCCA AAGAATTAGAGAGTTCAGGGACAGAGTGTCCAGAGTGTGGGGACTTCTACAAACCTCTGAAGATTTCGATCCAGCCCTCTTGCAGCCTATATTACAGGTG CTTCAACAACCCGAGGCGCGCAGTCTGGGGGGACGTGTGATTGGTGGAGTAACTCAGCGCCTTGCAGCTCGATTGTTGCAACAAGTTCTTCGAACCCCAC CCCCTACTTCTTCTTCTTCTCCGACATTATAG
AA sequence Show only first row Show all	>Lus10035701 pacid=23147646 polypeptide=Lus10035701 locus=Lus10035701.g ID=Lus10035701.BGIv1.0 annot-version=v1.0 MSLVSTGGNSLAPGLFPNFRTTHPPLRRRPAPPSLNSARAAIVESRPARISVPPSLRNGAANSNGQLVLVSAGGGGGGGGDRAEDIQAEARAMGRAVNAP VFTPELIATKFGPRPIQVVRRTLEILLTLGSFGLKLWLDGRNGVFDQNKRIRATELRKIFTRLGPTFVKLGQGLSTRPDICPPEFLEELAELQDDLPTFP DDEAFACIETELGVSLNSIYSAISPSPIAAASLGQVYKAQLKSSGQTVAVKVQRPGIEEVIGLDFYLVRGLGGLINKYVDFITSDVVALIDEFACRVYQE LNYVQEGKNARRFKKLYAEKEDILVPDIFWDYTSGKVLTMEWVDGVKLSQHEAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHPGNLLATPEGKLA FLDFGMMSETPEEARFAIIGHVVHLVNRDYEAMAQDYYALKFLSRDVDVTPIVPALQNFFDDALNYTVSELNFKTLVDGLGAVFYQYPFNVPAYYALILR SLTVLEGLALNADPNFKVLAASYPYFAKRLLTDPNPYLRDALIELLFKDGRFRYTYSSTTPPPSPRELLFKDGRFRWKRLENLLVQGSKDRDFSAKDALQ PVLKLLLGEDGEELRSLVVKEAVYVSEAVVLTSVVDTYNSIPPPLRLPILNGNGRGPLTMMSEIEFQRIREFRDRVSRVWGLLQTSEDFDPALLQPILQV LQQPEARSLGGRVIGGVTQRLAARLLQQVLRTPPPTSSSSPTL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79600			Protein kinase superfamily pro...		Lus10035701 [exp]	0	1
AT5G25840			Protein of unknown function (D...		Lus10011427 [exp]	4.7	0.8604
AT5G65730		XTH6, XTR10	xyloglucan endotransglucosylas...		Lus10039643 [exp]	4.9	0.8696
					Lus10016100 [exp]	7.1	0.8563
AT1G12480		SLAC1, RCD3, CD...	SLOW ANION CHANNEL-ASSOCIATED ...		Lus10006678 [exp]	10.6	0.8549
AT5G65730		XTH6, XTR10	xyloglucan endotransglucosylas...		Lus10011597 [exp]	11.0	0.8495
AT2G46915			Protein of unknown function (D...		Lus10010092 [exp]	18.4	0.7956
AT5G35970			P-loop containing nucleoside t...		Lus10024974 [exp]	21.1	0.8548
					Lus10000488 [exp]	22.4	0.8350
AT1G27760		SAT32, ATSAT32	SALT-TOLERANCE 32, interferon-...		Lus10018689 [exp]	23.1	0.7373
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10040474 [exp]	24.7	0.8170

Compare expression of checked genes

Lus10035701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.