Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16330 347 / 6e-121 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT3G21420 176 / 8e-53 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 176 / 8e-53 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10490 167 / 2e-49 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G24530 166 / 4e-49 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G78550 165 / 1e-48 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17020 165 / 2e-48 ATSRG1, SRG1 senescence-related gene 1 (.1) AT4G10500 162 / 2e-47 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 159 / 5e-46 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G49390 158 / 5e-46 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037292 [exp] 490 / 2e-175 AT4G16330 416 / 5e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10015573 [exp] 182 / 4e-55 AT5G24530 510 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005037 [exp] 176 / 2e-52 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10006518 [exp] 171 / 2e-50 AT3G21420 523 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10032930 [exp] 170 / 2e-50 AT5G24530 504 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10004387 [exp] 169 / 6e-50 AT3G11180 509 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10030185 [exp] 166 / 6e-49 AT4G10490 442 / 3e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027807 [exp] 164 / 9e-49 AT5G05600 330 / 1e-112 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10011981 [exp] 164 / 9e-48 AT1G17020 375 / 2e-129 senescence-related gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G024100 [exp] 356 / 5e-123 AT4G16330 419 / 7e-147 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.001G355100 [exp] 175 / 2e-52 AT1G17020 439 / 1e-154 senescence-related gene 1 (.1) Potri.006G101100 [exp] 171 / 6e-51 AT5G05600 462 / 1e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.012G006300 [exp] 171 / 7e-51 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G381700 [exp] 171 / 9e-51 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1) Potri.016G117100 [exp] 171 / 1e-50 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G023600 [exp] 171 / 1e-50 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101200 [exp] 169 / 8e-50 AT5G05600 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G382400 [exp] 166 / 4e-49 AT1G17020 446 / 1e-157 senescence-related gene 1 (.1) Potri.010G188000 [exp] 166 / 5e-49 AT5G05600 511 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10035702 pacid=23147618 polypeptide=Lus10035702 locus=Lus10035702.g ID=Lus10035702.BGIv1.0 annot-version=v1.0 ATGAGGAAGCTCGGTCTGTCCTTCTTCAACGACTCCCCCATGGAGGACAAGCTCATGTATAGCTGCTCGCCGGACTCCGCCGCTTCAGAAGGCTACGGGA GCAAGATGCTGGTGGACAGCGTTGAAAACCATGGGGTTTTGGATTGGAGGGACTATTTCGACCACCATACCTTGCCTCTCTCGCGCCGGAATCCAGATGT TGTTTCTCGGTACAGCGATGAAATGAATGAGCTGGCCGAGAAGCTGCTGGGAGTTATCTCGGAGAGTCTTGGGGTGGCATCTTCTTGTATAAAGGATGTA GCTGGGGAATTCTATCAGAATATTACTGTCAGTTATTACCCTCCCTGCCCTCGCCCAGACCTCACCTTGGGTCTTCAGTCCCATTCCGATTTCGGAGCTC TCACCTTATTGATCCAAGACCAAGTTTCTGGCCTTGAGGTTCTCAAGGACTCACATTGGTTCCCTGTCCAGCCTCTTCCGGAAGCCATTGTTGTCCTTGT TTCAGATCAAACGGAGATCATCACCAACGGGAAGTACAGGAGTGCTGTGCACAGAGCTGTGACCAACTCCAACATGGCAAGGTTGTCAGTTGCAACATTC CATGATCCAGCCAAGACCAGAAACATATCCCCTGCTCCCGAGATCGTGTCCGAGTCATCACCTCAGAGATACCGAGAAGTGAATTACGGCGATTACATGT CAAAATGGTATACCAAAGGCCCAGAAGGGAAACGGAACATCGATTCCCTCTTGATCGACTCTTATCAAGTGCTGCTGCTGCCCCTTGATTCAAAAAATCA TAGTTTCATTTTCTGCATTTTACAAGTAAAGAGTCTGCATATGTCGTTTGGTGAAGCTCTTTATATCTGCAGATATACAGGATACCTATTCTTCTAG
AA sequence Show only first row Show all	>Lus10035702 pacid=23147618 polypeptide=Lus10035702 locus=Lus10035702.g ID=Lus10035702.BGIv1.0 annot-version=v1.0 MRKLGLSFFNDSPMEDKLMYSCSPDSAASEGYGSKMLVDSVENHGVLDWRDYFDHHTLPLSRRNPDVVSRYSDEMNELAEKLLGVISESLGVASSCIKDV AGEFYQNITVSYYPPCPRPDLTLGLQSHSDFGALTLLIQDQVSGLEVLKDSHWFPVQPLPEAIVVLVSDQTEIITNGKYRSAVHRAVTNSNMARLSVATF HDPAKTRNISPAPEIVSESSPQRYREVNYGDYMSKWYTKGPEGKRNIDSLLIDSYQVLLLPLDSKNHSFIFCILQVKSLHMSFGEALYICRYTGYLFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16330			2-oxoglutarate (2OG) and Fe(II...		Lus10035702 [exp]	0	1
AT4G05440		EDA35	embryo sac development arrest ...		Lus10006898 [exp]	1.4	0.7006
AT1G48170			unknown protein		Lus10022783 [exp]	5.0	0.7170
AT1G48170			unknown protein		Lus10022781 [exp]	9.5	0.6906
AT3G50360		CEN1, ATCEN2	CENTRIN 1, centrin2 (.1)		Lus10003320 [exp]	16.5	0.6708
AT1G72660			P-loop containing nucleoside t...		Lus10015662 [exp]	27.5	0.6588
AT3G26810		AFB2	auxin signaling F-box 2 (.1)		Lus10031991 [exp]	40.1	0.6339
AT5G27260			unknown protein		Lus10035759 [exp]	57.2	0.6115
AT5G61370			Pentatricopeptide repeat (PPR)...		Lus10000207 [exp]	62.1	0.5637
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Lus10003617 [exp]	100.2	0.5929
AT5G61370			Pentatricopeptide repeat (PPR)...		Lus10021630 [exp]	102.7	0.5540

Compare expression of checked genes

Lus10035702 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.