Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78980 678 / 0 SRF5 STRUBBELIG-receptor family 5 (.1) AT3G13065 634 / 0 SRF4 STRUBBELIG-receptor family 4 (.1) AT1G53730 536 / 3e-176 SRF6 STRUBBELIG-receptor family 6 (.1.2) AT3G13000 520 / 1e-172 Protein of unknown function, DUF547 (.1.2) AT1G16750 416 / 3e-133 Protein of unknown function, DUF547 (.1) AT3G14350 367 / 7e-113 SRF7 STRUBBELIG-receptor family 7 (.1.2.3) AT4G22130 322 / 2e-97 SRF8 STRUBBELIG-receptor family 8 (.1.2) AT4G03390 281 / 1e-80 SRF3 STRUBBELIG-receptor family 3 (.1) AT2G20850 264 / 2e-74 SRF1 STRUBBELIG-receptor family 1 (.1) AT1G11130 249 / 2e-69 SRF9, SCM, SUB STRUBBELIG-RECEPTOR FAMILY 9, SCRAMBLED, Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033333 [exp] 920 / 0 AT1G78980 803 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10037294 [exp] 893 / 0 AT1G78980 525 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10034790 [exp] 870 / 0 AT1G78980 768 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10037293 [exp] 815 / 0 AT3G13000 663 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10033328 [exp] 648 / 0 AT3G13000 712 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10034787 [exp] 640 / 0 AT3G13000 710 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10003926 [exp] 376 / 2e-115 AT1G53730 885 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Lus10037464 [exp] 374 / 2e-115 AT1G53730 824 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Lus10027653 [exp] 362 / 1e-111 AT3G13000 459 / 4e-156 Protein of unknown function, DUF547 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G001200 [exp] 796 / 0 AT1G78980 817 / 0.0 STRUBBELIG-receptor family 5 (.1) Potri.007G002600 [exp] 776 / 0 AT1G78980 499 / 1e-168 STRUBBELIG-receptor family 5 (.1) Potri.001G161600 [exp] 572 / 0 AT1G53730 590 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.007G003900 [exp] 570 / 0 AT3G13000 654 / 0.0 Protein of unknown function, DUF547 (.1.2) Potri.006G216800 [exp] 369 / 2e-114 AT3G13000 437 / 1e-147 Protein of unknown function, DUF547 (.1.2) Potri.003G073700 [exp] 369 / 6e-113 AT1G53730 575 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.004G005301 [exp] 327 / 1e-97 AT4G22130 906 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.011G010500 [exp] 325 / 4e-97 AT4G22130 916 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.019G103900 [exp] 282 / 1e-80 AT4G03390 801 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.004G037000 [exp] 275 / 2e-78 AT4G03390 645 / 0.0 STRUBBELIG-receptor family 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04784 [flax] [poplar] DUF547 Protein of unknown function, DUF547 CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10035703 pacid=23147578 polypeptide=Lus10035703 locus=Lus10035703.g ID=Lus10035703.BGIv1.0 annot-version=v1.0 ATGTACCCTACCTTCTTCCTCATCATCATTTCCATCCTCGCCACTCTCATCTCCAATGTTTATTCCAAGACCGATTCCCAACATGTTGCGGCTCTGAATG TGATGTACACGAGCTTGAATTCTCCGTCAAAATTGGACGGATGGAGGCCTAGCGGGGGCGACCCTTGTGGGGATTCTTGGGATGGAATTACTTGCTCCGA CTCTAAAGTCACCGAAATAAGATTATCAGGGATGGGACTCACAGGGACGCTGGGATACCAACTCTCCAACTTGAAATCAGTCACCCACTTTGATGTGAGC AAGAACAAGCTGCAACAAGAGATACCTTATCAGCTCCCTCCAAACGCAGTCTACATAGATTTATCCAAGAATCAATTTCAGGGCACTCTGCCTTATTCAG TCTCACTGATGACTGACCTTGAACATCTAGATGTGAGTAATAACAAGCTAAATGGGCAGCTCACTGATATGTTTCAGAAACTTTCTAAGCTCCAAGTCAT GGATTTATCAAACAACAAGATGTCAGGGGATCTGCCCCAAAGCCTGTCATCACTTAAGAGCTTGAGTCAGCTGTTCTTGCAAAACAACAAATTCACCGGG AAAATCCTTATGTTGGGGAACCTTCCATTGGACGAGCTAAACCTTGCCAACAACAAGTTCACCGGGTTCATCCCTGCAAAGCTTGCCGACATCAACAGCT TAAATACTGATGGGAACAACTGGTCAAAAGGGCCAGCACCACCAGGCCAAAAGACAGCATCAAATGCAAACACTGGTGGTGGAGGAGCAAAGGTATCAAC AGGAATCATGATAGCACTTATAGTATTAGGAGTGGTCATCCTGATCGTCCTTCTCATCATCCTCTTCTTCTCGAGGAAACGAGCCTCTTCTCCTTCGTCG TTCCTGGACGACGAGGAGAAGAGTCATCACCACCACCGGAACGGGTTCACCCCTCTCACTTCACAAGAACTCTCTTACAACAACAACCACCACCCCCATT TCCCGCCCCCGAGAGAGTCCTTTGAGTCCACAAACTCGATCGACATCAAGACCCTCCAGAAGGCGCCTTCCCAGGGCTACAAGCCGCCTCCTTACGACTT TGCGCAGTCTTTAAACGACACCGAATTCGCCAGCCGCTTGAACTCCAAGAGAGGTGCAGCCGGCGGTGCCAGGGCTCCTGTTCCTTACGCCCTGTCGGAG CTGCAGGGCGCTACCTCTGGTTTCGCCCCTGGCCGCCTTCTTGGGGAAGGCACGTTGGGCCGTGTCTACAGGGCCAAATACGCCGATGGAAAGGTGCTGG CTGTGAAGAAGATTGATTCTTCCTACTTCAAAGAAGGGAAAATTGAGGATTTCTCCGACATTGTGGCGAGCATTTCGAAAATTCATCATCCGAACGTTGC GGAGCTTGTGGGGTACTGTTCGGAGCAAGGGCATAACATGTTGATTTATGAGTACTACAGGAATGGCTCACTTCATGACTTCCTGCACAATTCCGGTGAC TTCAGCAATCCCTTGACTTGGAACACCCGAGTCCGCATTGCTCTTGGGACCGCACGAGCTGTTGAGTATCTGCATGAAACGTGTTCTCCACCGGTGATCC ACAGGTTCATAAAATCATCCAACATTTTACTTGACCTTGATCTTAATCCCCACCTTTGTGACTACGGCTTGGGTAACTTCCACTCGAAGACAAAAGAGAA CCTAGGAGTAGGGTACACCGCACCGGAGTGCACAACGCCATCAGCATATTCGATGAAGAGCGACATCTACAGTTTTGGTGTTGTTATGCTCGAGCTATTG ACTGGTCGAATGCCTTTTGATCAGTCGAAATCAAAGTCGGAACAATCGCTTGTGAGATGGGCAACTCCACAGCTGCACGATATAGATGCATTGGGACATA TGGTGGATCAAGCACTTCGTGGTCTTTACCCTCCCAAAGCCATCTCGAGATTTGCTGACATCATCGCCCTTTGTGTTCAGGTCCAAAGATTACAGCAGCA GTTGCAAGCAGAGATTGAAGTGCACGAGATTCTCAAAGATGCTACTGAGAAACGCACAGTTGAATTATCTTGTTCATCATGCCTCCCACATCAAGCTCAG GAGCTTCTCTCTACTATTGCTACATTAGAGATCACAGTTACAGAACTTGAACAAAGCATTGTCCATTTGCATTTCCAGCTTACTCAAGAGAGAAATGAGC GTCGGCTAGTTGAATACCGCCTTGATCATTCATCACTGCCTTCGGTGACTGTTTGCTCCTCTGATTATGACAGAATAATGGAAGCGATCAGGCCAACAAC ATCTTTGGACGGCAAGAAAGCAGCTCTAAAGATGGATGCTAAACTGGGTCCTTGTCTGAATCCCAAAATTTCGAAGGAAATGACATCGAGTGGCCTATGG GGTCACCCTAATAAACTTTCTGAGGAGATGGTAAAGTGTATGAAAAACATATTCATATCTCTATCAGATTCTCCTGTGTCCGAAAAATCCTCTGCACTAG AGAGCCAATCTTCACCAGTGTCTCTTTCTAATTCATCATGGTGGCCATCGTCATCTGAGCGCTCAATATTATCATCATGGGCCCAGAGCCCCAAAGTTGA TATCCAGAGTAACGGCGAAGTGTTGTCTTCTGAGAATGGTTCCGATCCTTACAGAGTCAGAGGGAAATTGAGCTGGGCTGACATTGGGAACTATGGCTTA GCAACTGAAGTGTCATGGATGTCAGTTGGAAAGAAACAATTAGAGTATGCGTCCGGGGCATTAAGGAAGTTCAGTTTATTGAATGCTTTTCTCGATATGG CCCGTCCTCCTGATAACAGAACACTCGTCGAACAACTGGCCAAAGTGAATCCTATTCACTTGAGCTGCGATGAGAAGCTTGCTTTCTGGATCAACTTGTA CAATGCGCTGATCATGCATGCACAGCGTGCAGTTTGTAGCCCTTGCCAAGTGAATAAAATAGCGTTGGTGCTGTTTCAGGCTGCTTATACTGTTGGGGGC AATTCTTTCAGTGCAGCTGCCATTGAGTACGCGATTTTGAAGATGAAACCTCCACTCCACAGACCACAAATTGCTTTGCTTCTTGCTCTCCACAAACTGA AGCTATCAGAGGAAGAACGGAAATGTGCGGTCAATACACATGAGCCGCTTGTAGCATTTGCCCTCAGTTGTGGAATGTATTCCTCGCCTGCGGTAATGTC TGGTCCTATATCAGCTCCAAGAGCTGTTATTGTGGCCACAGTAAGGATTTACACGGCAAAGAACGTAAGAGAAGAGCTTGAAGAAGCTCAGCACGATTTC ATCAGGGCTAGCGTTGGGATCAGCAGCAGAGGGAAGCTGTTGGTGCCCAAGTTGGTGCACTGCTTTGCTAAGAGCTTTGTGGACGATTCCAACTTGGCAG TATGGATATCTAATTACCTGCCCCAGAATCAGGCTGCATTTGTCGAGCAGTGCATTTTGCAGAGGCGGCAAGGGCTCTTGGCTTCTAGGAATTGCGGAAT CCTGCCTTTTGATTCTCGATACCGGTATTTGTTCCTTCCTGACAAAGTTCCGATACGGTGA
AA sequence Show only first row Show all	>Lus10035703 pacid=23147578 polypeptide=Lus10035703 locus=Lus10035703.g ID=Lus10035703.BGIv1.0 annot-version=v1.0 MYPTFFLIIISILATLISNVYSKTDSQHVAALNVMYTSLNSPSKLDGWRPSGGDPCGDSWDGITCSDSKVTEIRLSGMGLTGTLGYQLSNLKSVTHFDVS KNKLQQEIPYQLPPNAVYIDLSKNQFQGTLPYSVSLMTDLEHLDVSNNKLNGQLTDMFQKLSKLQVMDLSNNKMSGDLPQSLSSLKSLSQLFLQNNKFTG KILMLGNLPLDELNLANNKFTGFIPAKLADINSLNTDGNNWSKGPAPPGQKTASNANTGGGGAKVSTGIMIALIVLGVVILIVLLIILFFSRKRASSPSS FLDDEEKSHHHHRNGFTPLTSQELSYNNNHHPHFPPPRESFESTNSIDIKTLQKAPSQGYKPPPYDFAQSLNDTEFASRLNSKRGAAGGARAPVPYALSE LQGATSGFAPGRLLGEGTLGRVYRAKYADGKVLAVKKIDSSYFKEGKIEDFSDIVASISKIHHPNVAELVGYCSEQGHNMLIYEYYRNGSLHDFLHNSGD FSNPLTWNTRVRIALGTARAVEYLHETCSPPVIHRFIKSSNILLDLDLNPHLCDYGLGNFHSKTKENLGVGYTAPECTTPSAYSMKSDIYSFGVVMLELL TGRMPFDQSKSKSEQSLVRWATPQLHDIDALGHMVDQALRGLYPPKAISRFADIIALCVQVQRLQQQLQAEIEVHEILKDATEKRTVELSCSSCLPHQAQ ELLSTIATLEITVTELEQSIVHLHFQLTQERNERRLVEYRLDHSSLPSVTVCSSDYDRIMEAIRPTTSLDGKKAALKMDAKLGPCLNPKISKEMTSSGLW GHPNKLSEEMVKCMKNIFISLSDSPVSEKSSALESQSSPVSLSNSSWWPSSSERSILSSWAQSPKVDIQSNGEVLSSENGSDPYRVRGKLSWADIGNYGL ATEVSWMSVGKKQLEYASGALRKFSLLNAFLDMARPPDNRTLVEQLAKVNPIHLSCDEKLAFWINLYNALIMHAQRAVCSPCQVNKIALVLFQAAYTVGG NSFSAAAIEYAILKMKPPLHRPQIALLLALHKLKLSEEERKCAVNTHEPLVAFALSCGMYSSPAVMSGPISAPRAVIVATVRIYTAKNVREELEEAQHDF IRASVGISSRGKLLVPKLVHCFAKSFVDDSNLAVWISNYLPQNQAAFVEQCILQRRQGLLASRNCGILPFDSRYRYLFLPDKVPIR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Lus10035703 [exp]	0	1
AT5G35400			Pseudouridine synthase family ...		Lus10022949 [exp]	6.3	0.7782
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Lus10022878 [exp]	9.0	0.7787
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Lus10041893 [exp]	9.5	0.7908
AT2G26970			Polynucleotidyl transferase, r...		Lus10041292 [exp]	12.0	0.7735
AT3G13226			regulatory protein RecX family...		Lus10032955 [exp]	13.0	0.7718
					Lus10035486 [exp]	13.3	0.7870
AT5G01620		TBL35	TRICHOME BIREFRINGENCE-LIKE 35...		Lus10012229 [exp]	15.0	0.7715
AT5G13980			Glycosyl hydrolase family 38 p...		Lus10036074 [exp]	20.0	0.7720
AT4G17150			alpha/beta-Hydrolases superfam...		Lus10039125 [exp]	26.9	0.7444
AT2G18950		ATHPT, VTE2, TP...	VITAMIN E 2, homogentisate phy...		Lus10025472 [exp]	28.3	0.7532

Compare expression of checked genes

Lus10035703 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.