Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13050 346 / 6e-115 AtNiaP nicotinate transporter, Major facilitator superfamily protein (.1) AT3G20660 80 / 7e-16 4-Oct, ATOCT4 organic cation/carnitine transporter4 (.1) AT2G16120 66 / 1e-11 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT2G16130 64 / 7e-11 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT3G19940 63 / 2e-10 Major facilitator superfamily protein (.1) AT1G30220 62 / 4e-10 ATINT2 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) AT3G18830 62 / 4e-10 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT1G50310 61 / 6e-10 ATSTP9 sugar transporter 9 (.1) AT2G18480 61 / 7e-10 AtPLT3 Major facilitator superfamily protein (.1) AT1G20840 61 / 9e-10 AtTMT1, TMT1 tonoplast monosaccharide transporter1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037295 [exp] 638 / 0 AT3G13050 363 / 1e-121 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10033336 [exp] 545 / 0 AT3G13050 485 / 2e-168 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10033337 [exp] 470 / 1e-163 AT3G13050 508 / 2e-177 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10043061 [exp] 439 / 2e-145 AT3G13050 522 / 1e-176 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10027577 [exp] 315 / 2e-102 AT3G13050 504 / 1e-175 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10008555 [exp] 309 / 3e-100 AT3G13050 499 / 7e-174 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10027576 [exp] 221 / 1e-68 AT3G13050 293 / 6e-96 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10018992 [exp] 160 / 1e-43 AT3G13050 464 / 2e-160 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10014801 [exp] 81 / 3e-16 AT3G20660 704 / 0.0 organic cation/carnitine transporter4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G003100 [exp] 419 / 3e-143 AT3G13050 555 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.007G003000 [exp] 403 / 4e-137 AT3G13050 597 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.014G000800 [exp] 404 / 1e-136 AT3G13050 597 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.018G150700 [exp] 339 / 5e-112 AT3G13050 482 / 3e-167 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.018G151700 [exp] 244 / 7e-74 AT3G13050 294 / 2e-91 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.011G130533 [exp] 84 / 3e-17 AT3G20660 708 / 0.0 organic cation/carnitine transporter4 (.1) Potri.009G113600 [exp] 71 / 8e-13 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G152300 [exp] 69 / 3e-12 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.007G027900 [exp] 68 / 4e-12 AT4G36670 638 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Potri.004G151725 [exp] 67 / 9e-12 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10035704 pacid=23147507 polypeptide=Lus10035704 locus=Lus10035704.g ID=Lus10035704.BGIv1.0 annot-version=v1.0 ATGCTCTTCGGTTCCTACGTATGGGGTTTGCTTTCAGACAAACTTGGAAGAAGGAGGGGGTTTTTGTTCACGGCAATAGTGACTTCGGTAGCAGGGCTGT TCAGTGCATTTTCTTGGAACTATACAGTGCTGTGTGTATCTCGTGCGATTGTTGGTGTTGGGCTGGGAGGAGTGCCAGTAGTGTTTACATGGTTCTTGGA GTTCATACCAGCACCAACCAGAGGAAAGTGGATGGTTGGTTTCAACTTTTTCTGGACCCTTGGTGCTATTCTTGAAGTTGGTCTCGCATGGATTGTGATG CCGAGATTAGGATGGAAATGGCTAGTTGGTCTGTCAGCTATTCCATCCTTTCTTCTCCTAGTGTTCTACTACTGGACACCTGAGTCTCCAAGGTACCTAT GCCTAAAGGGCAGAAAAGATGAAGCATTCAGAATCATGGAGAAAGTATCCAAATGCAACAAAAAAAGCTTACCTCCTGGTGTCCTTCTTACCGACCGTGA AATCGAGCAACAATCAGCCTCTGGTTCCGATTCCTCCGGGTGGGATGATTCCGACTTGGGATTCCTGACCACGCTCCGACTCCTTCTCTCTCGGAAGTTG GCTCGATCCACCATCCTGCTGTGGCTAATATTCTTTGGGAATTCATTCTCCTACTATGGCCTGGTCCTGCTCACCACTCAGCTGAACCGCAAAGACTTGT GCAGCAAGACTCCATCAAAATCAACAGACTCTGGTGCTGGGATTGACTACAAGAATGTTTTCATTACTACTCTAGCAGGTAGGCCACTGCTCATGAAATC ATTCATGTGGCGCTGTGTGGTTTTGCTTGCAGAGTGTCCAGGCGCATTATTGGCCATTCTGTTGGTGGATAAAATTGGCCGCAAGTATTCCATGGCATCC ATGCTGTTCCTCTGCTGTGCCTTTGTGTTGCCGCTGGTAGTGCATCAAAATTCTGTTGTTACTACAATCCTGCTGTTCGGAGCTCGTATTTGCATCACTG GATCTTTTGCTATTGCCTTTGTACTGGCTCCAGAGCTGTACCCAACGTCAGTAAGGTCAACTGGATTTGGAATAGCGAGTTCGATGGGGAGGATTGGAGG GATAACAGCTCCTTTCGTGGCGGTAAGCTTGACTGAAAGATGTCGTCAGAGCGAAGCAGTGCTGCTGTTCATCGGTATAGCTGCTGTAGCATTGATAGCT GCACTGTTCATACCACATGAAACCAAAGGGATTGAGCTGACGGAGAGCATATCGAGCATGAAGAACGAAACCCGGAAGAAAGACCTCAAGCGTCACTTAG ATGCCTGA
AA sequence Show only first row Show all	>Lus10035704 pacid=23147507 polypeptide=Lus10035704 locus=Lus10035704.g ID=Lus10035704.BGIv1.0 annot-version=v1.0 MLFGSYVWGLLSDKLGRRRGFLFTAIVTSVAGLFSAFSWNYTVLCVSRAIVGVGLGGVPVVFTWFLEFIPAPTRGKWMVGFNFFWTLGAILEVGLAWIVM PRLGWKWLVGLSAIPSFLLLVFYYWTPESPRYLCLKGRKDEAFRIMEKVSKCNKKSLPPGVLLTDREIEQQSASGSDSSGWDDSDLGFLTTLRLLLSRKL ARSTILLWLIFFGNSFSYYGLVLLTTQLNRKDLCSKTPSKSTDSGAGIDYKNVFITTLAGRPLLMKSFMWRCVVLLAECPGALLAILLVDKIGRKYSMAS MLFLCCAFVLPLVVHQNSVVTTILLFGARICITGSFAIAFVLAPELYPTSVRSTGFGIASSMGRIGGITAPFVAVSLTERCRQSEAVLLFIGIAAVALIA ALFIPHETKGIELTESISSMKNETRKKDLKRHLDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10035704 [exp]	0	1
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10037087 [exp]	2.2	0.7932
AT3G13600			calmodulin-binding family prot...		Lus10016052 [exp]	3.5	0.7785
AT3G02570		PMI1, MEE31	PHOSPHOMANNOSE ISOMERASE 1, MA...		Lus10017603 [exp]	4.5	0.7689
AT1G54215			proline-rich family protein (....		Lus10015652 [exp]	6.0	0.7665
AT3G44480		COG1, RPP10, RP...	recognition of peronospora par...		Lus10007455 [exp]	6.7	0.7735
AT1G27170			transmembrane receptors;ATP bi...		Lus10007823 [exp]	8.9	0.7586
AT4G34370		ATARI1	ARABIDOPSIS ARIADNE 1, ARIADNE...		Lus10040508 [exp]	9.2	0.7624
AT4G02940			oxidoreductase, 2OG-Fe(II) oxy...		Lus10027990 [exp]	10.7	0.7024
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10038639 [exp]	11.1	0.7709
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10001581 [exp]	17.5	0.7537

Compare expression of checked genes

Lus10035704 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.