Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26300 244 / 1e-75 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G26290 243 / 2e-75 CYP71B26 "cytochrome P450, family 71, subfamily B, polypeptide 26", cytochrome P450, family 71, subfamily B, polypeptide 26 (.1) AT3G26330 242 / 4e-75 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G26210 241 / 2e-74 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) AT5G57260 234 / 4e-72 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT3G26310 234 / 6e-72 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G48310 231 / 5e-71 CYP71A22 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) AT3G48320 231 / 5e-71 CYP71A21 "cytochrome P450, family 71, subfamily A, polypeptide 21", cytochrome P450, family 71, subfamily A, polypeptide 21 (.1) AT1G13080 228 / 1e-70 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT3G26320 230 / 2e-70 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012879 [exp] 328 / 1e-107 AT3G26330 409 / 6e-138 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10031674 [exp] 318 / 8e-104 AT3G26300 399 / 3e-134 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10034230 [exp] 308 / 5e-100 AT1G13110 400 / 9e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10016601 [exp] 305 / 4e-99 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10009903 [exp] 304 / 1e-98 AT5G57260 376 / 1e-125 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) Lus10029035 [exp] 302 / 7e-98 AT1G13110 402 / 1e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10030924 [exp] 295 / 6e-95 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10028926 [exp] 290 / 6e-93 AT3G26330 382 / 3e-127 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10039063 [exp] 288 / 4e-92 AT3G26300 392 / 3e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G223500 [exp] 306 / 9e-100 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364900 [exp] 297 / 2e-98 AT3G26300 228 / 1e-70 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 291 / 1e-93 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130850 [exp] 289 / 4e-93 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 288 / 1e-92 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365100 [exp] 286 / 9e-92 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074900 [exp] 285 / 2e-91 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 283 / 7e-91 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Potri.007G074300 [exp] 280 / 1e-89 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 279 / 3e-89 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10035706 pacid=23147677 polypeptide=Lus10035706 locus=Lus10035706.g ID=Lus10035706.BGIv1.0 annot-version=v1.0 ATGAGCGAGCTGATATTTCTGGCGACGAACAACGTAACGTCGAGGGCTGCGTTCGGGAAGCGGTGTAGGGACAGCGGGGAGTTCCTGTCGCTGCTGCAGC AGGTGATTCAGATTGCCGGCGGGTTCAACTTGCCTGATTTGTACCCGTCGTTCAAATTCCTGAGGAAGGTGACCGGGATCGAGTCGGAGCTGAAGCGGAT ACATGGCGGGATTGATCGGATATTGGAGGAGATAGTGAATCAGCACGTGCTTCAGGCCGGTCAGGTTGACGGTCAGGAGGATCTGTTGGATATTATGATC AAGCTGCAGGGTTCCGGTCAGCTTGATTTGAAGCTCACCGCCAATCACCTCAAAGCCATCACTATGGATGTATTTTCAGCCGGAAGCGAGACATCGGCGA CAACGATGGAATGGGCAATGGCAGAACTGATGAAGAACCCAACAACCATGAAGAAGGCACAAACAGAGTTACGAGAAACCTTCAAAGGGAAGCCTAAAAT TGAGGAGAGTGACCTCCAGCACCACGACTTAACTTACTTGAGAGCACTCATCAAAGAAACTCTAAGGTTGCACCCTCCGGGTCCTTTACTCCCACGCGAG TCCGTAGAACCTTGTGAGGTCGGGGGATACCAGATCCCACCGAAGGCCAAGATCCTCATCAATGCATACGCGATAGGGAGAGACCCGGAGCTATGGCCTG AGCCAGAGCGCTTCATGCCAGAGCGATTCGTGGGGTCGAGCGTGGACTTCAGAGGGTCCAACTTCGAATTGATCCCGTTCGGAGGAGGGAGAAGGATTTG TCCTGGAATATCGTTTGCTAACGCCAATATAGAACTAGCGTTGGCTAGGATGTTGTACCACTTTGACTGGAGCTTGCCGGAAGGGATGAAGGCTGAAGAG GTAGATATGAGCGAGAGCAATGGGATTACTGCTAGGAAGAAGGGATGCCTCGTGGAAGAAACTGCTCTAGGATGGCATGTATGCACCATATGCGATCCAC AAAACAAGTTACTGTCAAGAAAGGCAGCAGTGCAAGAGTTGATCTTTTATGGAAAGATGGAAGAGTTGCTGCAGAAAAACAAGGAGGAACCAGATGCAGA GAGTTCGGGACACATGAAAATCAACAACAATCCTGGTAGTGAAATGTTGGAGACTGGAAGCACTAGTAGCCTTGGAGAAAGTAAAGGAAAGGGAGCTACC TGCAAGATGAACCAGTCGAAGAAGAACAAGTGGAGAGGAGGGAGAAAAAGATCATAG
AA sequence Show only first row Show all	>Lus10035706 pacid=23147677 polypeptide=Lus10035706 locus=Lus10035706.g ID=Lus10035706.BGIv1.0 annot-version=v1.0 MSELIFLATNNVTSRAAFGKRCRDSGEFLSLLQQVIQIAGGFNLPDLYPSFKFLRKVTGIESELKRIHGGIDRILEEIVNQHVLQAGQVDGQEDLLDIMI KLQGSGQLDLKLTANHLKAITMDVFSAGSETSATTMEWAMAELMKNPTTMKKAQTELRETFKGKPKIEESDLQHHDLTYLRALIKETLRLHPPGPLLPRE SVEPCEVGGYQIPPKAKILINAYAIGRDPELWPEPERFMPERFVGSSVDFRGSNFELIPFGGGRRICPGISFANANIELALARMLYHFDWSLPEGMKAEE VDMSESNGITARKKGCLVEETALGWHVCTICDPQNKLLSRKAAVQELIFYGKMEELLQKNKEEPDAESSGHMKINNNPGSEMLETGSTSSLGESKGKGAT CKMNQSKKNKWRGGRKRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10035706 [exp]	0	1
AT4G23700		ATCHX17	cation/H+ exchanger 17, cation...		Lus10024717 [exp]	4.5	0.8108
AT4G23700		ATCHX17	cation/H+ exchanger 17, cation...		Lus10024716 [exp]	5.7	0.8091
AT1G63820			CCT motif family protein (.1)		Lus10024655 [exp]	7.7	0.7548
AT1G33760	AP2_ERF		Integrase-type DNA-binding sup...		Lus10003513 [exp]	7.7	0.7997
AT1G33760	AP2_ERF		Integrase-type DNA-binding sup...		Lus10002953 [exp]	10.8	0.7931
AT4G10440			S-adenosyl-L-methionine-depend...		Lus10008298 [exp]	14.3	0.6695
					Lus10015620 [exp]	14.5	0.7903
AT3G14880			unknown protein		Lus10039193 [exp]	17.2	0.7597
AT5G25840			Protein of unknown function (D...		Lus10006044 [exp]	19.1	0.7848
AT5G67480		ATBT4, BT4	BTB and TAZ domain protein 4 (...		Lus10025196 [exp]	19.6	0.7284

Compare expression of checked genes

Lus10035706 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.