Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39470 255 / 2e-83 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53560 118 / 1e-30 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G37400 108 / 3e-27 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G02590 108 / 4e-27 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G18420 102 / 6e-25 Protein prenylyltransferase superfamily protein (.1) AT3G09490 86 / 6e-19 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024433 [exp] 105 / 5e-26 AT2G37400 271 / 1e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025299 [exp] 105 / 1e-25 AT2G37400 272 / 3e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031923 [exp] 81 / 3e-17 AT3G18420 270 / 2e-89 Protein prenylyltransferase superfamily protein (.1) Lus10035087 [exp] 57 / 4e-10 AT3G18420 133 / 6e-39 Protein prenylyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G079200 [exp] 288 / 3e-96 AT4G39470 314 / 5e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G085700 [exp] 287 / 8e-96 AT4G39470 296 / 7e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G080000 [exp] 113 / 5e-29 AT2G37400 342 / 4e-117 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G213600 [exp] 108 / 4e-27 AT3G53560 327 / 1e-111 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G098500 [exp] 99 / 8e-24 AT3G18420 328 / 5e-112 Protein prenylyltransferase superfamily protein (.1) Potri.008G143600 [exp] 96 / 1e-22 AT3G18420 356 / 4e-123 Protein prenylyltransferase superfamily protein (.1) Potri.016G081200 [exp] 72 / 3e-16 AT3G53560 127 / 2e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G142980 [exp] 62 / 2e-11 AT3G18420 244 / 5e-82 Protein prenylyltransferase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035707 pacid=23147559 polypeptide=Lus10035707 locus=Lus10035707.g ID=Lus10035707.BGIv1.0 annot-version=v1.0 ATGACTTCCGTCAACCCACTTTGTTGCCGGTATCATCCTCAATCCCAGATTCCCAGTCTGAGATTTCTCAGTAGGAGCTTCAGTATTTCACCGAAGACCC CCATTTTCAGCATAAACCCACAACGTATTCCGTACGCTACATCGCCAAACCCTTCAATTCTCAAACTTTCTTGCGTCCCTGACACACCGGATTCAAGTTT CCCCAGATTAAAGGCATTAATCTCACCACCTTCGGCTAGAAAATGCCTGGTTTTCCTAGTCGGGGCATTTGTTTTCGTCTGTTCGTTAGGGTTTACTTCT CCTAGACTGAGCTTGGCTCTACCTGCACAAGCGGCTGATTCATCCCGGACTGCGGTAGAGAAGGAGAATGAGAGCGATGAGGAGATCATGTACGAAAAGC TTGTGGAGACGGAACCAAAGAATGCGAACGCTTTGAAGACTGTTGTGTACGGGAAGATGAGGAGAGGGAAAAATAATGAGGCTGTGAAGTATTTGGAAAG ATTGATTGATATTGAGCCGGACGAAGTGGAATGGAGGCTTTTGGAGGCACTTTGTTTTGAAATGATGGGGCAATTCAGCAAGGCTAAAAGGTTGTTCAAG GAAATCCTGAAAGAGAGGCCTCTTTTGATTAGAGCTTTGCACGGGAATCTGGAAGAGGGTTTAAGTAAATTTCAGGACCTAGTTAATGACAATCCTCGAG ATTTTCGGCCTTATCTTTGCCAGGGTATCATATACAGCCTGATGGAGAAGAAAAGCGAAGCTGCTGAGCAGTTCGAGACATACCAGAGTCTGGTGCCTGA TGATTTTCCGCAGAGAATATTCTTGGATGACGTAGTGATGGCCTCAAAAACCAAGTCCAGGGAATGGCTTCAGAAGGAATTTGATACTGAATTGTCAAGA AAAGGGAAACTGTAG
AA sequence Show only first row Show all	>Lus10035707 pacid=23147559 polypeptide=Lus10035707 locus=Lus10035707.g ID=Lus10035707.BGIv1.0 annot-version=v1.0 MTSVNPLCCRYHPQSQIPSLRFLSRSFSISPKTPIFSINPQRIPYATSPNPSILKLSCVPDTPDSSFPRLKALISPPSARKCLVFLVGAFVFVCSLGFTS PRLSLALPAQAADSSRTAVEKENESDEEIMYEKLVETEPKNANALKTVVYGKMRRGKNNEAVKYLERLIDIEPDEVEWRLLEALCFEMMGQFSKAKRLFK EILKERPLLIRALHGNLEEGLSKFQDLVNDNPRDFRPYLCQGIIYSLMEKKSEAAEQFETYQSLVPDDFPQRIFLDDVVMASKTKSREWLQKEFDTELSR KGKL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39470			Tetratricopeptide repeat (TPR)...		Lus10035707 [exp]	0	1
AT2G17033			pentatricopeptide (PPR) repeat...		Lus10025090 [exp]	3.5	0.7389
AT5G08510			Pentatricopeptide repeat (PPR)...		Lus10030225 [exp]	5.7	0.7352
AT2G22870		EMB2001	embryo defective 2001, P-loop ...		Lus10011703 [exp]	6.9	0.7207
AT5G13230			Tetratricopeptide repeat (TPR)...		Lus10014956 [exp]	10.4	0.7106
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Lus10029372 [exp]	11.0	0.7415
AT3G59980			Nucleic acid-binding, OB-fold-...		Lus10025611 [exp]	19.6	0.6940
AT1G67660			Restriction endonuclease, type...		Lus10006437 [exp]	27.5	0.7196
					Lus10042733 [exp]	29.3	0.6449
AT1G69200		FLN2	fructokinase-like 2 (.1)		Lus10036920 [exp]	37.4	0.7161
AT5G23710			DNA binding;DNA-directed RNA p...		Lus10003505 [exp]	45.2	0.6873

Compare expression of checked genes

Lus10035707 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.