Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36690 629 / 0 ATU2AF65A U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4) AT1G60900 627 / 0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) AT1G16770 322 / 9e-103 unknown protein AT1G60830 164 / 2e-47 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G33435 74 / 4e-13 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G09880 66 / 1e-10 Splicing factor, CC1-like (.1) AT1G71800 64 / 2e-10 CSTF64 cleavage stimulating factor 64 (.1) AT5G50250 62 / 4e-10 CP31B chloroplast RNA-binding protein 31B (.1) AT4G24770 61 / 2e-09 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT5G51300 58 / 3e-08 splicing factor-related (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037299 [exp] 742 / 0 AT1G60900 629 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) Lus10024026 [exp] 616 / 0 AT4G36690 678 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4) Lus10041725 [exp] 615 / 0 AT4G36690 672 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4) Lus10037300 [exp] 472 / 2e-160 AT1G16770 377 / 2e-131 unknown protein Lus10011791 [exp] 127 / 7e-30 AT2G33435 215 / 6e-63 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10023746 [exp] 123 / 2e-28 AT2G33435 209 / 2e-60 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10011201 [exp] 81 / 4e-18 AT1G60830 71 / 3e-17 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10017923 [exp] 66 / 7e-11 AT1G71800 306 / 4e-98 cleavage stimulating factor 64 (.1) Lus10014814 [exp] 65 / 2e-10 AT1G71800 350 / 2e-116 cleavage stimulating factor 64 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G125500 [exp] 670 / 0 AT4G36690 626 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4) Potri.007G028500 [exp] 660 / 0 AT4G36690 601 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4) Potri.004G040900 [exp] 526 / 4e-178 AT1G60900 541 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) Potri.011G050400 [exp] 520 / 7e-176 AT1G60900 532 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) Potri.014G003300 [exp] 235 / 2e-70 AT1G16770 261 / 4e-86 unknown protein Potri.004G169900 [exp] 206 / 5e-60 AT1G16770 238 / 2e-77 unknown protein Potri.010G068400 [exp] 112 / 5e-25 AT2G33435 237 / 3e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G028300 [exp] 66 / 4e-11 AT2G18510 453 / 4e-160 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G340800 [exp] 64 / 1e-10 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.002G061200 [exp] 64 / 4e-10 AT1G71800 354 / 3e-117 cleavage stimulating factor 64 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10035713 pacid=23147477 polypeptide=Lus10035713 locus=Lus10035713.g ID=Lus10035713.BGIv1.0 annot-version=v1.0 ATGACGGAATACGAAGGAGGGACGTACTCTGACGATTTCGACAACAATATCAACAGCAACGGTGGAGAAGGAGACTACGCCGCAGCTGATGCCAACACTG GTGCCGCTGCTTCCCCTCAGTTGTTCGCAGCACATAATCGCTTGCGAAAACATCTGTCCTGCCTGAATCTCGAGACCGGGAAAGAGAACCATCAAAGAGC AGGGAAAAGGATAGAGAAAAACGGCATGACAAAGATCGAGACCGGGAAAGGGACAGGGACAGGGAAAAAAGCAGGGACAGGGACAGGGAAAAAAGCAGGG ATCGTGACCGTCACCACCGGGATAGAGATAGGGATCGAGATCGGCATAGGGATCGTGGTGAACGAAGGGAACGGGGTAGAGACAGAGATGATGATGATGA TTATCCTCGAAGCCGGGACTATGATAGGCGTAGAGATCATGACAGGGACAAAGATGACAGGCACAGGCGTAGCACTCGATCTCATTCGAGGGGTCGTTCT CCTTCAAAAGGTAGATCTCCTTCGAAGAGTAGATCTGAGCGCAGGTCAAGATCACGCTCTCGTTCACGCTCCAAGAGGTATACGAGAATGTTCCATTCAA GAACACAAACGGCCCAGTGGCTTTGATATGGCTCCTCCTGCTCCAGCAATGTTGCCTATTGGAGCTACTGCTGTAGGCCAGATTGCAGGCACCACGCCTG CCCTTGCTGGAATGTTTCCTAATATGTTCCCACAAATGACTGGTCAGCCATTTAATACACTCCCCATCATGCCAGCTCAGGCGATGACACAGCAGGCAAC CCGGCATGCACGTCGCGTCTACGTTGGTGGGCTTCCTCCAACAGCTAACGAACAGTCTGTTGCAACTTATTTCAACCAAGTCATGGCAGCAATTGGAGGT AACACTGCTGGTCCAGGTGATGCTGTTGTTAATGTCTATATAAACCATGATAAGAAGTTTGCATTTGTGGAGATGAGATCTGTGGAGGAGGCGAGTAATG CCATGGCCTTGGATGGTATTATATTTGAGGGAGCTCCGGTGAAGGTGAGGAGGCCGACTGACTATAATCCATCTCTAGCAGCAACACTTGGCCCTAGCCA ACCAAATCCCAACCTCAACTTAGGTGCAGTGGGTCTAACCCCTGGTTCTGCTGGTGGACTTGAGGGTCCAGACCGTATATTTGTGGGTGGCCTTCCTTAT TACTTTACGGAGGCACAAGTCAGGGAGTTGCTGGAGTCGTTTGGGCCACTTAGAGGTTTTGATTTGGTAAAAGATAGAGAAACCGGGAACTCGAAAGGCT ATGCATTCTGTGTTTACCAAGATGTGACGGTGACAGACATTGCTTGTGCTGCTCTGAATGGAATTAAGATGGGCGACAAGACGCTAACTGTTAGGCGTGC CAACCAGGGCACGAATCAGCCTAAACCGGAACAAGAGAACGTACTATTGCATGCCAAGCAGCAAATTGCTTTGCAGGGTGCCTTGTTGGGCCAGCCTTCA ATAATGCAGAGACTTATGCTGCAACCAGGACCGACAAAAGTTGTATGCTTAACTCAAGTAGTCACTGAGGATGAACTAAGAGACGATCAAGAGTATGAAG ACATCTTGGAAGACATGAGAATAGAAGGCGGAAAATTTGGAAATTTGCTGAATGTTGTTATCCCTCGACCAAATCCTGAAGGTGGGCCTTCACCTGGAGT AGGCAAGGTGTTCTTGGAGTATGGAGATAATGATGGTGCTGCAAAAGCAAGAGCGGGAATGAATGGGAGGAAATTTGGTGGGAACGAAGTGGTGGCTGTG TTCTATGATGAAAACAGGCCGAGAGTGAACAGAGAAGAAGCTCACAGCCCTGACGACGTCCAACGCCTCTACATTGTCCTCAGGCCCCAATCCGGCGACC GTCCCACCGAAGGCAAACAGGAACCAGACTCCGGCAAGGAAGGCTCCAAAGCCAATATCAACAAGCAGGATGACACCGCTACCACCGCCAAGGAAGGTGG ACACGGCGCCCAGAAAGTGAACATCGAGAAGGAGAAACTGATGAGATTCATCGTAATGGGACGCAAAAGCCTTCCGGACCCAAGCAAGAAAGGCCGCCCC TTCTGGGGGTTTGTCGATTTGGTCACCACCAACCTTGACCATGTCAAGGACGCTCTTAAACCAAAGGAGTACCAGACATCGACACGTGGGAAGAGGCACG AGGGAGCGGCGAGGGCAGCCGGAGAAGGGATCTACCGGATCCTGAGGCACAGCCCGTCGGGCAAGAACAAGAAGATGCACACACACCTTGTTTATAAGCT GGAGCTGCCGGCGGAAGGGAAACAGAACGAGCCTCAAGAGGCGCTAAACATTGAACGAGAAGGTTCGTTCGTGATCCAGATTAAGAACCCGGATGCAGTA GGTGGGTCATCGGGTTCGAGGTTCGGTGGGCTTCAGGAGAAGCGGAGGGCCCAATATCCAGCCCATTTGCAGGGCCAGTTCGGACGGAGCAAGAGATACG GGCCGGCCGACCCGCCGGATTTGTTGAACTACGAAGGGTGCGAGTTTCTGATGATATCGGCGTCGGATGACATTGAGGAGGAGCTGGGGTTGGAGTTGAA GACTGATGAGGACTGCGGGAGAGGGGAAGACGAGGAGTTGTGTTCGGATTTGGTAAGGGATTTTGGCGACGTGGTTGCTCCGACCCCGCTTCTGGAAGGC ACCTGGGCTTAG
AA sequence Show only first row Show all	>Lus10035713 pacid=23147477 polypeptide=Lus10035713 locus=Lus10035713.g ID=Lus10035713.BGIv1.0 annot-version=v1.0 MTEYEGGTYSDDFDNNINSNGGEGDYAAADANTGAAASPQLFAAHNRLRKHLSCLNLETGKENHQRAGKRIEKNGMTKIETGKGTGTGKKAGTGTGKKAG IVTVTTGIEIGIEIGIGIVVNEGNGVETEMMMMIILEAGTMIGVEIMTGTKMTGTGVALDLIRGVVLLQKVDLLRRVDLSAGQDHALVHAPRGIRECSIQ EHKRPSGFDMAPPAPAMLPIGATAVGQIAGTTPALAGMFPNMFPQMTGQPFNTLPIMPAQAMTQQATRHARRVYVGGLPPTANEQSVATYFNQVMAAIGG NTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLEGPDRIFVGGLPY YFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDVTVTDIACAALNGIKMGDKTLTVRRANQGTNQPKPEQENVLLHAKQQIALQGALLGQPS IMQRLMLQPGPTKVVCLTQVVTEDELRDDQEYEDILEDMRIEGGKFGNLLNVVIPRPNPEGGPSPGVGKVFLEYGDNDGAAKARAGMNGRKFGGNEVVAV FYDENRPRVNREEAHSPDDVQRLYIVLRPQSGDRPTEGKQEPDSGKEGSKANINKQDDTATTAKEGGHGAQKVNIEKEKLMRFIVMGRKSLPDPSKKGRP FWGFVDLVTTNLDHVKDALKPKEYQTSTRGKRHEGAARAAGEGIYRILRHSPSGKNKKMHTHLVYKLELPAEGKQNEPQEALNIEREGSFVIQIKNPDAV GGSSGSRFGGLQEKRRAQYPAHLQGQFGRSKRYGPADPPDLLNYEGCEFLMISASDDIEEELGLELKTDEDCGRGEDEELCSDLVRDFGDVVAPTPLLEG TWA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60900			U2 snRNP auxilliary factor, la...		Lus10035713 [exp]	0	1
AT1G60900			U2 snRNP auxilliary factor, la...		Lus10037299 [exp]	1.4	0.8965
AT2G16940			Splicing factor, CC1-like (.1....		Lus10027830 [exp]	4.9	0.7998
AT3G20240			Mitochondrial substrate carrie...		Lus10033351 [exp]	5.8	0.8219
AT5G63120			P-loop containing nucleoside t...		Lus10019484 [exp]	6.9	0.7744
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10019618 [exp]	11.1	0.7298
					Lus10007413 [exp]	18.2	0.7479
AT1G60200			splicing factor PWI domain-con...		Lus10029161 [exp]	21.1	0.8075
AT5G63120			P-loop containing nucleoside t...		Lus10043334 [exp]	21.3	0.7057
AT2G19170		SLP3	subtilisin-like serine proteas...		Lus10001006 [exp]	21.8	0.7160
AT5G03450			Transducin/WD40 repeat-like su...		Lus10013821 [exp]	22.4	0.7833

Compare expression of checked genes

Lus10035713 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.