Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78930 583 / 0 Mitochondrial transcription termination factor family protein (.1) AT2G21710 140 / 3e-35 EMB2219 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) AT4G38160 121 / 1e-30 PDE191 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) AT2G03050 113 / 6e-28 SOLDAT10, EMB93 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) AT4G14605 111 / 5e-26 Mitochondrial transcription termination factor family protein (.1) AT5G55580 110 / 1e-25 Mitochondrial transcription termination factor family protein (.1) AT4G02990 109 / 3e-25 RUG2, BSM RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) AT2G44020 105 / 7e-24 Mitochondrial transcription termination factor family protein (.1) AT3G18870 100 / 2e-23 Mitochondrial transcription termination factor family protein (.1) AT2G36000 93 / 1e-20 EMB3114 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037301 [exp] 873 / 0 AT1G78930 508 / 4e-175 Mitochondrial transcription termination factor family protein (.1) Lus10042322 [exp] 147 / 1e-37 AT2G21710 720 / 0.0 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) Lus10013854 [exp] 136 / 9e-36 AT4G38160 446 / 2e-158 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Lus10032120 [exp] 117 / 3e-29 AT2G34620 300 / 2e-101 Mitochondrial transcription termination factor family protein (.1) Lus10014567 [exp] 117 / 6e-29 AT2G34620 300 / 6e-101 Mitochondrial transcription termination factor family protein (.1) Lus10014877 [exp] 120 / 8e-29 AT4G02990 665 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Lus10026571 [exp] 110 / 7e-27 AT4G38160 252 / 4e-83 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Lus10004614 [exp] 114 / 8e-27 AT2G44020 707 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10032061 [exp] 112 / 4e-26 AT4G14605 521 / 0.0 Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G001800 [exp] 660 / 0 AT1G78930 633 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.009G170300 [exp] 149 / 1e-39 AT4G38160 479 / 8e-170 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Potri.004G209400 [exp] 145 / 3e-39 AT4G38160 481 / 3e-172 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Potri.009G116200 [exp] 141 / 1e-35 AT2G21710 748 / 0.0 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) Potri.013G116700 [exp] 119 / 8e-29 AT2G44020 764 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.017G067600 [exp] 113 / 1e-26 AT4G14605 571 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.016G072200 [exp] 107 / 2e-25 AT2G36000 280 / 1e-92 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Potri.006G205000 [exp] 103 / 5e-24 AT2G36000 284 / 2e-94 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Potri.001G361800 [exp] 104 / 9e-24 AT5G55580 584 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.014G137400 [exp] 97 / 2e-21 AT4G02990 669 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10035714 pacid=23147563 polypeptide=Lus10035714 locus=Lus10035714.g ID=Lus10035714.BGIv1.0 annot-version=v1.0 ATGAAAGATACACAGGAAGCCATTTCTATGTTTCTCCAGGGATTCGGAGTCTCCCCTGAGGACTCCAGTTTCATTGCTTCCAACTCCCCCAAGTATGCCA AGATGTTGATGGAAAGTGTGGAGGATTTGGATGAATGGAGCTCGTGGAAGACCGCTGATGGGAGTGGTGAAGAGTTTGGGGAGTTGAAGGATTTTAAGGA GAAGGTGGTTCATATGGCTATAGTTAAAGGTGATGATGGGAAAGTTGCCTTCTTGGAGAGTATCGGCTTGAATTTGTCCTCTTCCATGAATGTTGCTCGC TACCTATCCAAGGACTCGCTTCCTAGTTTGATTCACAAGGTCAAGTATATGAAGGACATTTTCTATTCTAGCAGTGGCGATAAAATAGTTTTTGGCAAGA ATGCTCGGCGAATGATGATGCATTTATCAATTCCCATTGATGAAGATTTGCAGCAGACGTTGTCCTTCTTTGAAAAGATTGAAGCAAGGCGTGGAGGTCT GGACATGTTGGGTTCCTCAGATGCCTCTTTCCGATATTTGGTTGAATCATTTCCTCGTATTCTCTCTCTGTCAGTAGATTCGCACCTTAAGCCTACAGTG GAATTTCTGGAAAGTATTGGGATTCCACCAAATCATTTGGGGAACATATTCTTACTGTTTCCACCGACTATCCTTTGGGGTGTCAAGGGCATTAGAAACA GAGTTAAAGCTTTCATAAAGGCAGGAACTGCTGATAAGAATATTGGCAAAGTGCTGGTAAAATATCCATGGGTTCTTTCTTCAGGCATTCTGGATAATTA CTCTGACGTCATTTCTTTCTTTGATGTGATGAAGGTTCCACGAGGCAGTGTGGAGAGAGCAGTTCAAAGCTGGCCTCATATATTGGGATGTTCGACTGGC AAGCTGAAGATTATGGTGGAACAGTTTGGTAAATTGGGTGTTGGAGACAAGAAGTTGGGTCAGGTTATTGCAACCAGTCCTCAATTATTACTCAGGAAAC CTAGTGAATTTCTACAAGTGGTGACATTCTTGAAGGACCTTGGATTCACAGAGGAAGCTGTTGGAATGATTCTCTGCCGTTGTCCGGAGATCTCTGCTGC CAGTATAGACAGCACTCTACGTAAGAAGATTGAATCTCTGGTTTCTATTGGGATTCATGAAGAACATCTCCCGCGAGTTATAAAGAAGTATCCGGAGATC CTTGTATCTGACTTTAGCCAAACTGTATATCCTCGGATGAAGTACTTGATGGAGATGGGAATAACGAAGAAAGACGTAGGGTTCATGGTGAGAAGGTTCT CTCCTCTGGTAGGATACAGCATTGAGAAGGTGCTGAGACCAAAATATGAGTTTTTGGTGGAGTCAATGGAGAGGGAAGTGAAAGATGTAGTGGAGTATCC AAGATACTTCAGCTATTCGTTGGAGAAGAGAATAAGACCCAGATATTTTATGCTCAAACACTTGAAAATAGAATGCAGCTTGAAAGACATGCTTTCCAAA AATGATGCCCAGTTTATGGAAGACTTCATGGATGCTGCTTCTTCTTCTTCTTAA
AA sequence Show only first row Show all	>Lus10035714 pacid=23147563 polypeptide=Lus10035714 locus=Lus10035714.g ID=Lus10035714.BGIv1.0 annot-version=v1.0 MKDTQEAISMFLQGFGVSPEDSSFIASNSPKYAKMLMESVEDLDEWSSWKTADGSGEEFGELKDFKEKVVHMAIVKGDDGKVAFLESIGLNLSSSMNVAR YLSKDSLPSLIHKVKYMKDIFYSSSGDKIVFGKNARRMMMHLSIPIDEDLQQTLSFFEKIEARRGGLDMLGSSDASFRYLVESFPRILSLSVDSHLKPTV EFLESIGIPPNHLGNIFLLFPPTILWGVKGIRNRVKAFIKAGTADKNIGKVLVKYPWVLSSGILDNYSDVISFFDVMKVPRGSVERAVQSWPHILGCSTG KLKIMVEQFGKLGVGDKKLGQVIATSPQLLLRKPSEFLQVVTFLKDLGFTEEAVGMILCRCPEISAASIDSTLRKKIESLVSIGIHEEHLPRVIKKYPEI LVSDFSQTVYPRMKYLMEMGITKKDVGFMVRRFSPLVGYSIEKVLRPKYEFLVESMEREVKDVVEYPRYFSYSLEKRIRPRYFMLKHLKIECSLKDMLSK NDAQFMEDFMDAASSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78930			Mitochondrial transcription te...		Lus10035714 [exp]	0	1
AT2G41720		EMB2654	EMBRYO DEFECTIVE 2654, Tetratr...		Lus10042068 [exp]	2.0	0.8034
AT3G46100		ATHRS1	Histidyl-tRNA synthetase 1 (.1...		Lus10023925 [exp]	4.2	0.7772
AT4G30720		PDE327	PIGMENT DEFECTIVE 327, FAD/NAD...		Lus10022174 [exp]	8.9	0.7891
AT2G39170			unknown protein		Lus10037961 [exp]	10.1	0.6901
AT4G27340			Met-10+ like family protein (....		Lus10037871 [exp]	10.2	0.7779
AT2G41720		EMB2654	EMBRYO DEFECTIVE 2654, Tetratr...		Lus10018075 [exp]	13.6	0.7807
AT3G21810	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10031572 [exp]	14.4	0.7412
AT1G73970			unknown protein		Lus10036972 [exp]	14.5	0.7884
AT1G80770		PDE318	pigment defective 318, P-loop ...		Lus10043354 [exp]	29.4	0.7418
AT2G45770		FRD4, CPFTSY	FERRIC CHELATE REDUCTASE DEFEC...		Lus10003676 [exp]	30.0	0.7025

Compare expression of checked genes

Lus10035714 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.