Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78922 130 / 2e-37 unknown protein AT1G21722 88 / 7e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G001400 [exp] 141 / 2e-41 AT1G78922 121 / 9e-34 unknown protein Potri.007G001650 [exp] 134 / 4e-40 AT1G78922 122 / 9e-36 unknown protein Potri.005G180400 [exp] 96 / 6e-24 AT1G21722 153 / 3e-46 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035715 pacid=23147691 polypeptide=Lus10035715 locus=Lus10035715.g ID=Lus10035715.BGIv1.0 annot-version=v1.0 ATGGGGGGAGTGTTGAGTCATGCAGCAAGCGGCGCTGGAGCATTCCTTGGGAATCTGGTTACAGCTCCTCTCAAATCTCTCTTTGGCGGATCATGCGATG GAATATGTGCAGGACCGTGGGATGTGGGATGTTTCATTGAGCATCTCTGCATCTCCAACCTCTTCAAGTTCGTCCTCATTCTAGCCCTCTGCTACATCAT TGTGGTGTTCGTCTACTTGCTATTCAAGGTAGGGATCTTCCAATGCGTGATAAAGAGCATTTGCAAGATGTGCTGGACGGCGTGTGCTACTTACTGCTAC GCTCTCCACCATATCATATGCTGTTTGTGTGACAAACTTTCAAGTGTTCCTCGCCACCACCGGAGGAGGAATAGGAGGGGACATTTTCACGACATTGAGA GAGGCGGCCGAAGAGGGTATGCTAGTGATCATCATACTCCCTCCTCCACTTCCACATCGACCTCCCAAATTGCGGGAGGCCGCCCCCACCATGGTCATTT GAGTGGTATTTCTAGTAGTAGTAGAAAGCGGAAGTCTTCGAGGATGTTGAGGGATGGTGGGAAGAGGAGGAGGTTCCACGGTGGCCACCGCAGCCGTCGT GGTGTTAGGATGAGGGGTGCTAAAGATGGTGGCGTGACAGGATTGAGGAGTTCTAGGCGGAGGAGGATTCGAGTCGTCAAAGGGAAGAAGAAGAAGAAAC CTCGTGGTGGTGGTTATGGGAGTTTTAAGAGGCAGAGGGTCAAGTGA
AA sequence Show only first row Show all	>Lus10035715 pacid=23147691 polypeptide=Lus10035715 locus=Lus10035715.g ID=Lus10035715.BGIv1.0 annot-version=v1.0 MGGVLSHAASGAGAFLGNLVTAPLKSLFGGSCDGICAGPWDVGCFIEHLCISNLFKFVLILALCYIIVVFVYLLFKVGIFQCVIKSICKMCWTACATYCY ALHHIICCLCDKLSSVPRHHRRRNRRGHFHDIERGGRRGYASDHHTPSSTSTSTSQIAGGRPHHGHLSGISSSSRKRKSSRMLRDGGKRRRFHGGHRSRR GVRMRGAKDGGVTGLRSSRRRRIRVVKGKKKKKPRGGGYGSFKRQRVK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78922			unknown protein		Lus10035715 [exp]	0	1
AT2G38510			MATE efflux family protein (.1...		Lus10025237 [exp]	3.9	0.8130
AT1G75420			UDP-Glycosyltransferase superf...		Lus10028338 [exp]	20.4	0.8208
AT5G60550		ATSNAK1, GRIK2	geminivirus rep interacting ki...		Lus10041298 [exp]	20.6	0.8270
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026329 [exp]	23.1	0.7854
AT5G26990			Drought-responsive family prot...		Lus10015412 [exp]	25.1	0.8154
AT5G13340			unknown protein		Lus10035960 [exp]	29.0	0.8064
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10011329 [exp]	34.8	0.8070
AT5G53900			Serine/threonine-protein kinas...		Lus10041936 [exp]	40.5	0.7453
AT1G13770		RUS3	ROOT UV-B SENSITIVE 3, Protein...		Lus10036909 [exp]	44.7	0.8026
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026328 [exp]	45.4	0.7419

Compare expression of checked genes

Lus10035715 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.