Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24400 143 / 5e-43 SAUR-like auxin-responsive protein family (.1) AT4G31320 127 / 1e-36 SAUR-like auxin-responsive protein family (.1) AT5G20810 83 / 6e-20 SAUR-like auxin-responsive protein family (.1.2) AT3G43120 79 / 3e-18 SAUR-like auxin-responsive protein family (.1) AT3G20220 77 / 6e-18 SAUR-like auxin-responsive protein family (.1) AT3G20210 79 / 8e-17 DELTAVPE, DELTA-VPE delta vacuolar processing enzyme (.1.2) AT4G00880 73 / 1e-16 SAUR-like auxin-responsive protein family (.1) AT5G18010 71 / 5e-16 SAUR19, SAUR24 small auxin up RNA 19, SAUR-like auxin-responsive protein family (.1) AT4G38825 71 / 8e-16 SAUR-like auxin-responsive protein family (.1) AT1G56150 71 / 9e-16 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037302 [exp] 217 / 3e-70 AT2G24400 150 / 2e-44 SAUR-like auxin-responsive protein family (.1) Lus10033348 [exp] 145 / 1e-43 AT2G24400 155 / 3e-48 SAUR-like auxin-responsive protein family (.1) Lus10026977 [exp] 124 / 2e-35 AT2G24400 184 / 1e-59 SAUR-like auxin-responsive protein family (.1) Lus10007561 [exp] 80 / 4e-19 AT4G34810 125 / 1e-38 SAUR-like auxin-responsive protein family (.1) Lus10034888 [exp] 76 / 5e-17 AT5G20810 210 / 2e-70 SAUR-like auxin-responsive protein family (.1.2) Lus10010110 [exp] 74 / 7e-17 AT2G46690 124 / 1e-37 SAUR-like auxin-responsive protein family (.1) Lus10031178 [exp] 74 / 4e-16 AT1G56150 128 / 1e-38 SAUR-like auxin-responsive protein family (.1) Lus10012184 [exp] 72 / 4e-16 AT4G34810 125 / 9e-39 SAUR-like auxin-responsive protein family (.1) Lus10031754 [exp] 73 / 5e-16 AT3G12830 170 / 2e-55 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G003900 [exp] 144 / 4e-44 AT2G24400 110 / 1e-31 SAUR-like auxin-responsive protein family (.1) Potri.010G253800 [exp] 140 / 6e-42 AT2G24400 142 / 4e-43 SAUR-like auxin-responsive protein family (.1) Potri.006G278100 [exp] 135 / 3e-40 AT2G24400 179 / 5e-58 SAUR-like auxin-responsive protein family (.1) Potri.006G137200 [exp] 84 / 1e-19 AT5G20810 201 / 1e-66 SAUR-like auxin-responsive protein family (.1.2) Potri.009G125900 [exp] 78 / 4e-18 AT5G10990 157 / 5e-50 SAUR-like auxin-responsive protein family (.1) Potri.018G063400 [exp] 77 / 1e-17 AT5G20810 219 / 3e-74 SAUR-like auxin-responsive protein family (.1.2) Potri.004G164300 [exp] 76 / 3e-17 AT5G10990 170 / 3e-55 SAUR-like auxin-responsive protein family (.1) Potri.009G127400 [exp] 72 / 3e-16 AT4G34770 111 / 3e-33 SAUR-like auxin-responsive protein family (.1) Potri.004G165200 [exp] 71 / 8e-16 AT5G18020 122 / 6e-38 SAUR-like auxin-responsive protein family (.1) Potri.012G023400 [exp] 71 / 1e-15 AT2G46690 125 / 4e-38 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10035716 pacid=23147392 polypeptide=Lus10035716 locus=Lus10035716.g ID=Lus10035716.BGIv1.0 annot-version=v1.0 ATGGATTCTTCCACTGCTAAAAAATCAAACAACAAGATCAGCGACATTGTCAGCCTCCAACGGATGCTCAAGAAATGGAAACGCATCGCCACCACTAATA AAACTGCACCCGCCGCCGCCGCCGCCCCCGCCGCCAAAACCACAACCACCAGTACCAGTACTGGCAGCAAGAGCATCAAGTTCATAAAGCGGACCTTCTC CTTCACGGATGTCTCTGCCTCCGCCGCATCAAACGGCGCCGTTCCGAAGGGGTACGTGGCAATATCCGTGGGCCGGGAGGAGATGAAGAGGTACGTGGTC CCCACCGAGTATCTGGCCCACCGGGCTTTCGGGTTGCTGCTCAGGGAGGCCGAGGAAGAGTTCGGCTTCCACCAGGAAGGAGTGCTCCGGATTCCCTGCG ACGTCGACGCCTTCGAGGAGATCTTGAAGGTCGTTCGGGGGAAAACGACGTCGGATCACGTCCTCAGCAGCATGCATTCGTCGTCTGATGATGACCATGA GGAGAGTGACGACCATGGTGGCCATCATCAGTTTGGGTTCCCGGCGTCCCCTAGTAGTAATGGTGTGAGTTGCTCGCCTTCGACGACGACGGCGTCTGGG GATTCGGACTATTCGGGTGCTGATCAACATTACCAGCATTATCAGCATCATCCTCAAATGTGTAGATGA
AA sequence Show only first row Show all	>Lus10035716 pacid=23147392 polypeptide=Lus10035716 locus=Lus10035716.g ID=Lus10035716.BGIv1.0 annot-version=v1.0 MDSSTAKKSNNKISDIVSLQRMLKKWKRIATTNKTAPAAAAAPAAKTTTTSTSTGSKSIKFIKRTFSFTDVSASAASNGAVPKGYVAISVGREEMKRYVV PTEYLAHRAFGLLLREAEEEFGFHQEGVLRIPCDVDAFEEILKVVRGKTTSDHVLSSMHSSSDDDHEESDDHGGHHQFGFPASPSSNGVSCSPSTTTASG DSDYSGADQHYQHYQHHPQMCR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24400			SAUR-like auxin-responsive pro...		Lus10035716 [exp]	0	1
AT4G12470		AZI1	azelaic acid induced 1 (.1)		Lus10032261 [exp]	2.2	0.9644
AT1G31710			Copper amine oxidase family pr...		Lus10013355 [exp]	2.8	0.9672
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10001429 [exp]	4.0	0.9725
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10038057 [exp]	4.0	0.9655
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021047 [exp]	4.0	0.9571
AT5G40810			Cytochrome C1 family (.1.2)		Lus10041577 [exp]	4.8	0.9433
AT2G02061			Nucleotide-diphospho-sugar tra...		Lus10031903 [exp]	4.9	0.9486
AT3G08030			Protein of unknown function, D...		Lus10016393 [exp]	6.9	0.9624
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10001637 [exp]	8.8	0.9663
					Lus10034649 [exp]	9.4	0.9203

Compare expression of checked genes

Lus10035716 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.