Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10730 226 / 5e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G15910 215 / 8e-69 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G32220 147 / 2e-42 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037306 [exp] 269 / 1e-90 AT5G10730 151 / 7e-45 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10020108 [exp] 221 / 1e-70 AT5G10730 427 / 5e-152 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010419 [exp] 152 / 2e-43 AT1G32220 397 / 5e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10012126 [exp] 93 / 6e-23 AT1G32220 241 / 3e-81 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10000057 [exp] 70 / 1e-14 AT1G32220 201 / 1e-65 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10012127 [exp] 60 / 9e-11 AT1G32220 106 / 3e-28 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10022632 [exp] 46 / 3e-05 AT4G35250 640 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10003328 [exp] 45 / 3e-05 AT4G35250 653 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G106300 [exp] 258 / 3e-85 AT5G10730 360 / 1e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G268000 [exp] 253 / 1e-83 AT5G10730 431 / 1e-153 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.018G013400 [exp] 247 / 4e-81 AT5G10730 422 / 2e-150 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G136900 [exp] 147 / 4e-42 AT1G32220 328 / 8e-113 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G183100 [exp] 45 / 5e-05 AT4G35250 650 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10035719 pacid=23147506 polypeptide=Lus10035719 locus=Lus10035719.g ID=Lus10035719.BGIv1.0 annot-version=v1.0 ATGGCTGCCCGCCTGGTGAGTTCAGGCTCCTCCTTCCCTAGATCGTTGTCGTCCGCGAACAAGAGATTGCTGTCCACTGCATCTTCTAACGATGTTGAAG GATCGACAGCGCGAGTTAAGGAACCAGGAGAGAAACAGCAAAAGCTTCTGGTTCTTGGAGGAAATGGGTATGTTGGGTCACATGTGTGCCGAAGGGCTCT GGATGAAGGCCTCACTGTTTCCAGCCTTATGATGTTCCCTGTTTTCACTATCAGGTCTGGTAGAGCATCTCTTCAGGACTCTTGGGCTGAAAGAATAGTT TGGCACAAAGTATCCACACATATTCAGGTCCTTCCTTACCTATTTGATGTCAAATCTAGCCTCCTTCGTACAGGAGACCTGCTTCAACCTGCTTCACTCA AGAATGTTTTCAATGGAATCACCTCTGTGATCTCTTGTGTTGGAGGTTTTGGCTCGCATTCTTACATGTATGATATAAATGGATCCGCCAATATTCATGC TATCACAGCTGCTGCAGAACAAGGTGTGAAAAGATTTGTCTACATCTCTGCTGCTGACTTTGGATTGGTTAATAAACTACTGCGAGGATATTATGATGGG AAGAGATCAACTGAGACAACGCTGATGAAGAAATACCCACAAAGTGGAGTGATTTTGAGGCCAGGTTTCATACACGGTGTTCGCAGGGTCGGAAGGCACA ACCTGAATTTGAGTATAATTGGTGCTCCTCTAGAGATGGCACTCCAACATGCAAGGATCTTAACCAAGATACCACTCATCGGTCCCCTTTTCATCCCGCC TATCAGTGCTGTTTCGGTAGCGAAAGTTGCAGTTGAAGCGGCAACTGATCTAGACGTCCCAGCGGGCATTGTCGATGTGTATGCCATGAGAAAGATGAGT GTGGAACATGCGTGA
AA sequence Show only first row Show all	>Lus10035719 pacid=23147506 polypeptide=Lus10035719 locus=Lus10035719.g ID=Lus10035719.BGIv1.0 annot-version=v1.0 MAARLVSSGSSFPRSLSSANKRLLSTASSNDVEGSTARVKEPGEKQQKLLVLGGNGYVGSHVCRRALDEGLTVSSLMMFPVFTIRSGRASLQDSWAERIV WHKVSTHIQVLPYLFDVKSSLLRTGDLLQPASLKNVFNGITSVISCVGGFGSHSYMYDINGSANIHAITAAAEQGVKRFVYISAADFGLVNKLLRGYYDG KRSTETTLMKKYPQSGVILRPGFIHGVRRVGRHNLNLSIIGAPLEMALQHARILTKIPLIGPLFIPPISAVSVAKVAVEAATDLDVPAGIVDVYAMRKMS VEHA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10730			NAD(P)-binding Rossmann-fold s...		Lus10035719 [exp]	0	1
AT4G34880			Amidase family protein (.1)		Lus10025066 [exp]	2.4	0.7174
AT3G62600		ATERDJ3B	DNAJ heat shock family protein...		Lus10022297 [exp]	6.9	0.6647
AT3G55120		A11, CFI, TT5	TRANSPARENT TESTA 5, CHALCONE ...		Lus10003311 [exp]	13.6	0.7162
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10032071 [exp]	18.3	0.6759
AT3G56140			Protein of unknown function (D...		Lus10017422 [exp]	28.7	0.6777
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Lus10027208 [exp]	39.7	0.6619
AT5G64130			cAMP-regulated phosphoprotein ...		Lus10009146 [exp]	50.1	0.6292
AT5G60540		EMB2407, ATPDX2...	EMBRYO DEFECTIVE 2407, pyridox...		Lus10034326 [exp]	52.7	0.6012
AT5G62500		ATEB1B	end binding protein 1B (.1)		Lus10023606 [exp]	66.9	0.6216
AT2G03510			SPFH/Band 7/PHB domain-contain...		Lus10036912 [exp]	72.2	0.6066

Compare expression of checked genes

Lus10035719 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.