Plant FIBer expression Database

Lus10035720 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037307
[exp]
161 / 2e-50 AT3G56910 39 / 6e-04 plastid-specific 50S ribosomal protein 5 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G027600
[exp]
57 / 2e-10 AT3G56910 / plastid-specific 50S ribosomal protein 5 (.1)
Potri.006G028500
[exp]
53 / 4e-09 ND /
Potri.006G029500
[exp]
53 / 5e-09 ND /
PFAM info
Representative CDS sequence
>Lus10035720 pacid=23147621 polypeptide=Lus10035720 locus=Lus10035720.g ID=Lus10035720.BGIv1.0 annot-version=v1.0
ATGGCTCTCGTTCTTCTCAATGTGGGTACTCCACTGTGGTCTTCATCTTGCTGTTGTTCATCATCCACATCAGCTAAGTCTGTTAGTTGTCTTCCCGTGT
TGCTTCATCTCCCCCTTTTGCCAATACCCATTAGCAGTTACTCTCAGTTGTCCCTTTTCTTCACAGTGGGTTTGTTATCTGATGCTTGCTTCCTACTTAG
GGGTTTATTCAACCTTTCAGTGCCCAGGTTGTGCATGAAGCCTGTTTCTCTGCAGTCGGTACGTCTTGAGGGACTTAGCTCTAGCCTTCCCATTGTCTCG
GCGAGGAATGTTGGGGTGATAACGAGGGCGGCTTCCGAAACTCCAGATGGCGTCGAGGCTTCGACCGATGGTGGTAAGGAAGAGAGTGTGACGATTGACA
AACTTCCGTTGGAGTCGAAGCTGCAGCTGAGGGTTGAGCAGCAGGAGAAAATGAAACTGGCGAGGAAGATCCGGTTAAGGAGAAAGAGGCTTGTGAGGAA
GCGGAAGTTGAGGAAGAAAGGGCGATGGCCTCCATCCAAAATGAGCAAGTTGAAGAATGTATGA
AA sequence
>Lus10035720 pacid=23147621 polypeptide=Lus10035720 locus=Lus10035720.g ID=Lus10035720.BGIv1.0 annot-version=v1.0
MALVLLNVGTPLWSSSCCCSSSTSAKSVSCLPVLLHLPLLPIPISSYSQLSLFFTVGLLSDACFLLRGLFNLSVPRLCMKPVSLQSVRLEGLSSSLPIVS
ARNVGVITRAASETPDGVEASTDGGKEESVTIDKLPLESKLQLRVEQQEKMKLARKIRLRRKRLVRKRKLRKKGRWPPSKMSKLKNV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G56910 PSRP5 plastid-specific 50S ribosomal... Lus10035720
[exp]
0 1
AT3G56910 PSRP5 plastid-specific 50S ribosomal... Lus10037307
[exp]
1.0 0.9934
AT4G19100 PAM68 photosynthesis affected mutant... Lus10012152
[exp]
2.4 0.9609
AT2G30695 unknown protein Lus10008364
[exp]
4.9 0.9621
AT2G38140 PSRP4 plastid-specific ribosomal pro... Lus10002497
[exp]
6.6 0.9599
AT5G65220 Ribosomal L29 family protein ... Lus10019653
[exp]
7.4 0.9597
AT3G15190 chloroplast 30S ribosomal prot... Lus10005538
[exp]
9.2 0.9542
AT3G06120 bHLH MUTE, bHLH045 MUTE, basic helix-loop-helix (... Lus10034031
[exp]
9.4 0.9469
AT3G15520 Cyclophilin-like peptidyl-prol... Lus10037891
[exp]
11.0 0.9532
AT2G01918 PQL3 PsbQ-like 3 (.1) Lus10004054
[exp]
12.6 0.9553
AT1G29070 Ribosomal protein L34 (.1) Lus10013928
[exp]
13.0 0.9560

Lus10035720 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.