Plant FIBer expression Database

Lus10035721 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G03070 324 / 3e-106 MED8 mediator subunit 8 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037308
[exp]
233 / 7e-73 AT2G03070 219 / 2e-66 mediator subunit 8 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G253100
[exp]
427 / 3e-146 AT2G03070 501 / 7e-174 mediator subunit 8 (.1)
PFAM info
Representative CDS sequence
>Lus10035721 pacid=23147390 polypeptide=Lus10035721 locus=Lus10035721.g ID=Lus10035721.BGIv1.0 annot-version=v1.0
ATGTCACTGGAGATAGTACTACCCGTTATGCTGTCCTCAAAGTTACTACCGGAGATAGAAACAGATGATAGCTTGAAGAGAGAGCAATTACTTCAGGGGA
TGCATAACCTGCCTGTCTCTTCACAGATTGAGAAGTTAAAGACTAGAATAGATATGATTGCTGCAGCTTGTGAAAGTGCAGAAAAAGTTCTAGCTGATAC
TCGTAAAGCCTATCAATTTGGTACCCGTCAAGGACCAACTATCATCCCAACATTAGACAAGGGGCAGGCTGCGAAAATTCATGAACTGGAGAACCTGCTC
AGAGCTGCTGTAAATTCTGGCGAAGGCTTACGATTACCGGTGGATCAGAGGCAGGTTACATCAACACTTCCAGTCCATTTGGCAGATATGCTTCCACTTA
ATGATACTGTTGGCGTGCATGGTTTTCCTGATGCGTCTGGGATGTACATGAAAGGCACTCCACCTATGACATCCAACAGCATTGGCAATCAGGGAACCTT
GTTACAGCATGCTTCTGGCACGCCGCTCATGACAAGATCAGCCGCGTCTCCTTCTACAGCTACAAGTGCCACTTCCTTTGATAACACAACTTCCCCTCTG
CCATATGCTAACTCACCCAGGTCTGGTACAAACATGATGAATACACCCTCTCCTCAACAACAAACACAACAACAGCAACATCAACAGCAACAAAGACAAA
AGTTGATGTCTTCGTTGCCTCAGCATCAGCAGATTCTTGCTCAACAAATGAGGCAATCTTCTATGCAAGGCCTTGCACAGATGCAATTTTCTCAGCCAAT
GGGACACCAACAATTTCAGAGTAGGCAGCTGTCTGCTGGCCATCTTCAGCATGGAATGGCGCAGGGCCAACTTGGTCAAGGCAATCAGTTAAATCGTCAT
TTGAATCAGTTTACCAATACTGCTAATTCTGCTTTGTTCAATGCTGCTCAAGGAGCACCCAGTACTCAGATGATCCCAAATATGTCTGCTATTGCATCGC
AGCCGCTAATGTCACGAATGCAGCAGTTTGGACTAGCTGCCACTAATTCTCAAAGGAGTCAAGGATCTCAATTTACGAATGACCAGTTGTACAATATGGC
ATCAAATCCTGGTAGCATGATGCCAATACAGCCCCAGCAACAACAGCAGCAGCAACAGCTTGGTTCTCAAGGTGCTTTCGGCAATATGGGAGCCATTGCT
CAGAATTTACAGCCTAATATGGTATCTCTTCAGAATGTCGCTCAGAATCATCCCAACTTCGCTCAACAAAGACAGCAAAATCAACAGCAGTAG
AA sequence
>Lus10035721 pacid=23147390 polypeptide=Lus10035721 locus=Lus10035721.g ID=Lus10035721.BGIv1.0 annot-version=v1.0
MSLEIVLPVMLSSKLLPEIETDDSLKREQLLQGMHNLPVSSQIEKLKTRIDMIAAACESAEKVLADTRKAYQFGTRQGPTIIPTLDKGQAAKIHELENLL
RAAVNSGEGLRLPVDQRQVTSTLPVHLADMLPLNDTVGVHGFPDASGMYMKGTPPMTSNSIGNQGTLLQHASGTPLMTRSAASPSTATSATSFDNTTSPL
PYANSPRSGTNMMNTPSPQQQTQQQQHQQQQRQKLMSSLPQHQQILAQQMRQSSMQGLAQMQFSQPMGHQQFQSRQLSAGHLQHGMAQGQLGQGNQLNRH
LNQFTNTANSALFNAAQGAPSTQMIPNMSAIASQPLMSRMQQFGLAATNSQRSQGSQFTNDQLYNMASNPGSMMPIQPQQQQQQQQLGSQGAFGNMGAIA
QNLQPNMVSLQNVAQNHPNFAQQRQQNQQQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G03070 MED8 mediator subunit 8 (.1) Lus10035721
[exp]
0 1
AT5G11010 Pre-mRNA cleavage complex II p... Lus10033124
[exp]
2.4 0.8967
AT2G35035 URED urease accessory protein D (.1... Lus10030170
[exp]
8.2 0.8867
AT5G44280 ATRING1A ARABIDOPSIS THALIANA RING 1A, ... Lus10039845
[exp]
9.5 0.8957
AT1G30540 Actin-like ATPase superfamily ... Lus10017642
[exp]
9.9 0.8727
AT3G07740 HXA2, HXA02, HA... homolog of yeast ADA2 2A (.1.2... Lus10017553
[exp]
11.3 0.8957
AT1G12140 FMOGS-OX5 ,FMO ... flavin-monooxygenase glucosino... Lus10032247
[exp]
13.0 0.8612
AT5G02520 unknown protein Lus10025814
[exp]
16.2 0.8754
AT1G55250 HUB2, HISTONEMO... histone mono-ubiquitination 2 ... Lus10041689
[exp]
16.4 0.8587
AT2G37840 Protein kinase superfamily pro... Lus10021493
[exp]
17.3 0.8483
AT4G39910 ATUBP3 ubiquitin-specific protease 3 ... Lus10014333
[exp]
19.6 0.8770

Lus10035721 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.