Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50430 715 / 0 ST7R, PA, LE, 7RED, DWF5 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) AT3G52940 150 / 4e-41 ELL1, HYD2, FK FACKEL, EXTRA-LONG-LIFESPAN 1, Ergosterol biosynthesis ERG4/ERG24 family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033356 [exp] 781 / 0 AT1G50430 751 / 0.0 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) Lus10034811 [exp] 751 / 0 AT1G50430 724 / 0.0 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) Lus10037309 [exp] 556 / 0 AT1G50430 489 / 2e-173 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) Lus10003377 [exp] 135 / 3e-35 AT3G52940 581 / 0.0 FACKEL, EXTRA-LONG-LIFESPAN 1, Ergosterol biosynthesis ERG4/ERG24 family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G253200 [exp] 743 / 0 AT1G50430 764 / 0.0 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) Potri.008G005200 [exp] 735 / 0 AT1G50430 753 / 0.0 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) Potri.006G116200 [exp] 149 / 5e-41 AT3G52940 508 / 0.0 FACKEL, EXTRA-LONG-LIFESPAN 1, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) Potri.010G253301 [exp] 66 / 2e-13 AT1G50430 49 / 6e-08 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0115 [flax] [poplar] Steroid_dh PF01222 [flax] [poplar] ERG4_ERG24 Ergosterol biosynthesis ERG4/ERG24 family
Representative CDS sequence Show only first row Show all	>Lus10035723 pacid=23147548 polypeptide=Lus10035723 locus=Lus10035723.g ID=Lus10035723.BGIv1.0 annot-version=v1.0 ATGGTTGAGGCCAACATTGTTCATTCCCCTCTCGTCACCTACGTCTCCGTCGTCTCCCTCCTCACCCTCTGTCCGCCTTTTGTTATTCTGCTATGGTATA CGATGGTTCATGCAGACGGTTCAGTATCCCAATCTTGGGATTATCTGAGTCGTACAGGTTTGAAGGGACTTGTAGATATATGGCCAAGACCAACTGCTAC TGCCTGGCAAATAATAGCTTGTTATGCTGCATTTGAGGCTGCACTTCAGCTTCTTTTACCTGGTAAAACAGTTGAAGGACCAATTTCTCCTAAAGGGAAC CGACCTGTCTACAAGGCGAACGGTGTGCTTGCATATGCAGTGACCATTGTTACATATGTTGGTCTGTGGTGGTCTGGAATATTGAACCCGGCAATGGTTT ATGATCACTTGGGAGAAATTTTCTCAGCTCTGATTTTCGGAAGCTTAGTCTTCTGTGTTTTCTTGTATATTAAAGGCCACGTTGCTCCATCATCAACGGA TTCTGGCTCCCTTGGGAACATAATTATTGATTTCTACTGGGGTATGGAGTTATATCCCCGAATTGGTAAGAACTTCGACATCAAAGTATTCACAAACTGC AGATTCGGGATGATGTCTTGGGCAGTTCTTGCATTGACCTATTGCTTTAAGCAGTATGAGCTGTATGGAAAAGTGGCGGACTCCTTGCTGGTAAATACAA TACTGATGCTGGTGTATATCACAAAGTTCTTCTGGTGGGAGGCTGGGTATTGGAATACAATGGACATAGCTCATGATCGAGCTGGCTTTTATATTTGTTG GGGATGCTTAGTGTGGGTTCCCTCTATATATACTTCTCCTGGTTTGTACCTTGTAAACCATCCGGTGGACCTTGGATCTCAGCTCGCACTTTTTATATTG GCTGCTGGTGTTCTCTGCATATATATCAACTATGACTGTGACAGACAGAGGCAGGAATTTCGCAGGAAAAATGGCAAGTGTTTAATTTGGGGAAAGGCTC CATCGAAGATTGTGGCTTCTTATACTACCGCGTCCGGGGAGACTAAGTCAAGCCTTCTTCTAACATCAGGATGGTGGGGCTTGGCTCGACATTTTCATTA CGTTCCTGAAATATTAGCTTCCTTTTTCTGGTCTGTCCCGGCACTCTTCAATCATTTTATCCCCTACTTCTATGTGATATATCTGACCATCCTTCTTGTG GACCGAGCTACACGAGATGATGATCGCTGCCGTTCGAAGTATGGAAAATACTGGAAGATATACTGCGACAAGGTTCCTTACCGCATTATACCCGGAATCT ACTGA
AA sequence Show only first row Show all	>Lus10035723 pacid=23147548 polypeptide=Lus10035723 locus=Lus10035723.g ID=Lus10035723.BGIv1.0 annot-version=v1.0 MVEANIVHSPLVTYVSVVSLLTLCPPFVILLWYTMVHADGSVSQSWDYLSRTGLKGLVDIWPRPTATAWQIIACYAAFEAALQLLLPGKTVEGPISPKGN RPVYKANGVLAYAVTIVTYVGLWWSGILNPAMVYDHLGEIFSALIFGSLVFCVFLYIKGHVAPSSTDSGSLGNIIIDFYWGMELYPRIGKNFDIKVFTNC RFGMMSWAVLALTYCFKQYELYGKVADSLLVNTILMLVYITKFFWWEAGYWNTMDIAHDRAGFYICWGCLVWVPSIYTSPGLYLVNHPVDLGSQLALFIL AAGVLCIYINYDCDRQRQEFRRKNGKCLIWGKAPSKIVASYTTASGETKSSLLLTSGWWGLARHFHYVPEILASFFWSVPALFNHFIPYFYVIYLTILLV DRATRDDDRCRSKYGKYWKIYCDKVPYRIIPGIY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Lus10035723 [exp]	0	1
AT5G47770		FPS1	farnesyl diphosphate synthase ...		Lus10006168 [exp]	1.7	0.9497
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Lus10034343 [exp]	2.8	0.9525
AT3G54250			GHMP kinase family protein (.1...		Lus10034147 [exp]	3.5	0.9581
AT3G66658		ALDH22A1	aldehyde dehydrogenase 22A1 (....		Lus10037763 [exp]	4.0	0.9425
AT5G05780		RPN8A, AE3, ATH...	ASYMMETRIC LEAVES ENHANCER 3, ...		Lus10027775 [exp]	5.7	0.9305
AT3G47930		ATGLDH	"L-galactono-1,4-lactone dehyd...		Lus10035411 [exp]	5.9	0.9475
AT5G41760			Nucleotide-sugar transporter f...		Lus10037204 [exp]	6.2	0.9272
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10030900 [exp]	6.5	0.9383
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10013788 [exp]	7.3	0.9472
AT1G69230		SP1L2	SPIRAL1-like2 (.1.2)		Lus10017859 [exp]	7.4	0.9207

Compare expression of checked genes

Lus10035723 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.