Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 213 / 2e-61 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 213 / 2e-61 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 203 / 7e-58 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 191 / 2e-53 EFR EF-TU receptor (.1) AT3G47110 186 / 6e-52 Leucine-rich repeat protein kinase family protein (.1) AT5G39390 141 / 2e-37 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 142 / 7e-37 Leucine-rich receptor-like protein kinase family protein (.1) AT1G35710 130 / 1e-32 Protein kinase family protein with leucine-rich repeat domain (.1) AT5G07280 130 / 1e-32 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 128 / 4e-32 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037310 [exp] 465 / 1e-155 AT3G47570 744 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037311 [exp] 309 / 3e-96 AT3G47570 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033329 [exp] 278 / 9e-85 AT3G47570 794 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033330 [exp] 278 / 2e-84 AT3G47570 783 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033384 [exp] 272 / 1e-82 AT3G47570 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031043 [exp] 265 / 1e-79 AT3G47570 756 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033362 [exp] 258 / 3e-77 AT3G47570 784 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033363 [exp] 242 / 1e-71 AT3G47570 758 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035726 [exp] 241 / 1e-70 AT3G47570 716 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G114400 [exp] 234 / 6e-70 AT3G47570 600 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G099100 [exp] 237 / 9e-70 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G020000 [exp] 231 / 1e-67 AT3G47570 816 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 219 / 1e-63 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 219 / 1e-63 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 218 / 3e-63 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 217 / 9e-63 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 217 / 1e-62 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102900 [exp] 216 / 2e-62 AT3G47570 843 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033700 [exp] 214 / 2e-61 AT3G47570 799 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10035724 pacid=23147380 polypeptide=Lus10035724 locus=Lus10035724.g ID=Lus10035724.BGIv1.0 annot-version=v1.0 ATGTTCAAGGACTTGCAAAGCTTGCGGTTGACAGGAAATCAGTTATCAGGTCGAATTCCCCCGTCCATTGGCAACCTCACTAAGCTGTCCGAACTTGACA TTTCGATCAACAATCTCAAAGGGGGGATTCCAAACACAATTGGAGATTGCAAGGGCAAATATCTCTATTTGCAAAGTAACTCATTCAATGGCACCCTCCC TCCATCCTTACCTTCTCTGAAAGGCCTACGAGAGCTGGACCTTTCGCTCAACGAATTACAAGGAGTGATCTTATCGGATCTTCGAAACAACAACCTTCTT CGATATCTCAATCTTTCATTCAATCATCTCCAAGGCCAGGTACCTAAAGAAGGAATCTTTTCAAATGCTACATCAATATCGTTGATGGGAAATAGCAGGC TCTGGGGTGGTGTATCAGAGCTCCATCTCCCAAACTGCACAACTAAAGCTGCCAAGCACAGAATAAATTCTAGAACAGTTGTGCTGACAGCGGTTATAGC ATCTGTGGGTCTATTCCTTCTCTCATTGTTAGCCATCGAGTTGATAGTCAAGGCAAGGTCAAAGAAGAAACCATCATCACTGGAAGATCCAAGAACACAC AATTTCATGAGAATCTCTTATGGAGATCTCTACAGAGCAACTAACAGATTCTCACCAGAGAGATTGATTGGTTCTGGCAGTTTTGGTACTGTTTATCGAG CCAAACTAGAAGATGAAAATGATACGTTAGTAGCTGTGAAGGTGCTCAACTTGCAGCAAAACGACAAGGCATATAATAGCCTGGCAGCAGAGTGTAATGC ATTGAGAAGTATCAGGCATAGGAATCTTGTGAAGGTCGTGTCTTACTGTTCCAGCTTGGATCACAAAGGAGAAGAATTCAAAGCTCTGGTTTTTGAATAC ATGGCTAACGGGAGTTTGGAGAAGTGGCTGTACCCCATGGATAATGGATTCCAATGTGGGATGGGTAGTGCTGCATCAAAGGAAGGGGATGTGTATAGCT TTGGGATTGTGGTACTGGAGATGTTTTCTGGGATAAGGCCGACGCATGAAATGTTCAAAGACGGTTTTAATATCCGCGACTACGTTAAGGCAGCTCTGCC GGACAGAATCGTCAGTGATAAGCCCAAATTTGTTCCCACCAACGGAATTGTCCATATCAGCCAATATTGA
AA sequence Show only first row Show all	>Lus10035724 pacid=23147380 polypeptide=Lus10035724 locus=Lus10035724.g ID=Lus10035724.BGIv1.0 annot-version=v1.0 MFKDLQSLRLTGNQLSGRIPPSIGNLTKLSELDISINNLKGGIPNTIGDCKGKYLYLQSNSFNGTLPPSLPSLKGLRELDLSLNELQGVILSDLRNNNLL RYLNLSFNHLQGQVPKEGIFSNATSISLMGNSRLWGGVSELHLPNCTTKAAKHRINSRTVVLTAVIASVGLFLLSLLAIELIVKARSKKKPSSLEDPRTH NFMRISYGDLYRATNRFSPERLIGSGSFGTVYRAKLEDENDTLVAVKVLNLQQNDKAYNSLAAECNALRSIRHRNLVKVVSYCSSLDHKGEEFKALVFEY MANGSLEKWLYPMDNGFQCGMGSAASKEGDVYSFGIVVLEMFSGIRPTHEMFKDGFNIRDYVKAALPDRIVSDKPKFVPTNGIVHISQY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10035724 [exp]	0	1
					Lus10005830 [exp]	3.6	0.9973
					Lus10009618 [exp]	5.1	0.9973
AT4G03220			Protein with RNI-like/FBD-like...		Lus10023567 [exp]	6.2	0.9973
AT1G75790		SKS18	SKU5 similar 18 (.1)		Lus10013556 [exp]	7.2	0.9973
AT1G61720		BAN	BANYULS, NAD(P)-binding Rossma...		Lus10006750 [exp]	7.7	0.9286
					Lus10013379 [exp]	8.0	0.9259
AT1G04645			Plant self-incompatibility pro...		Lus10002219 [exp]	8.1	0.9973
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10039085 [exp]	8.8	0.9973
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10024077 [exp]	9.5	0.9973
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10028844 [exp]	10.2	0.9971

Compare expression of checked genes

Lus10035724 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.