Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54850 127 / 8e-35 HSP20-like chaperones superfamily protein (.1) AT1G54840 102 / 3e-24 HSP20-like chaperones superfamily protein (.1.2) AT1G20870 89 / 2e-19 HSP20-like chaperones superfamily protein (.1) AT3G47580 85 / 1e-17 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 84 / 3e-17 EFR EF-TU receptor (.1) AT1G76440 76 / 2e-16 HSP20-like chaperones superfamily protein (.1.2.3) AT1G17230 80 / 5e-16 Leucine-rich receptor-like protein kinase family protein (.1) AT4G28560 79 / 6e-16 RIC7 ROP-interactive CRIB motif-containing protein 7 (.1) AT4G22730 78 / 2e-15 Leucine-rich repeat protein kinase family protein (.1) AT5G46330 78 / 2e-15 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037310 [exp] 202 / 2e-57 AT3G47570 744 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033384 [exp] 127 / 8e-32 AT3G47570 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033363 [exp] 124 / 8e-31 AT3G47570 758 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037311 [exp] 122 / 5e-30 AT3G47570 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035429 [exp] 112 / 8e-27 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033362 [exp] 111 / 3e-26 AT3G47570 784 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033329 [exp] 109 / 1e-25 AT3G47570 794 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035726 [exp] 101 / 6e-23 AT3G47570 716 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031043 [exp] 100 / 1e-22 AT3G47570 756 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G024600 [exp] 140 / 1e-39 AT1G54850 216 / 2e-71 HSP20-like chaperones superfamily protein (.1) Potri.013G024900 [exp] 132 / 2e-34 AT1G54850 175 / 6e-52 HSP20-like chaperones superfamily protein (.1) Potri.013G024750 [exp] 122 / 5e-31 AT1G54850 187 / 1e-57 HSP20-like chaperones superfamily protein (.1) Potri.010G228300 [exp] 96 / 3e-21 AT3G47570 743 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 95 / 9e-21 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G243100 [exp] 87 / 2e-20 AT1G76440 153 / 9e-49 HSP20-like chaperones superfamily protein (.1.2.3) Potri.008G033700 [exp] 93 / 3e-20 AT3G47570 799 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 93 / 3e-20 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 92 / 6e-20 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 91 / 2e-19 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035725 pacid=23147431 polypeptide=Lus10035725 locus=Lus10035725.g ID=Lus10035725.BGIv1.0 annot-version=v1.0 ATGAGGAAAGCAGAAGTCTCCACTAACAATTTCATCGTTTTGAGGTCTTCCACCAAGCGTGCACACAGTCAACCCGAGTCGATCAATCCTGAACAAGTTT ATGATGCGCCTCCTCTGAATGTGCCTCCTCTGAATGCTGTGCCCCTGAATTATTTCGACCCATTTGTAGCCGACGCTGGTACTAATGATGCTGATGCCAG TACTGGTGATCTCCCAGTTGAACCGGCACCTGCAGAAGACCCATCCTTGGTTTTCTTTCCAACTGGAACTACCGAAGCTGAGTATGCAAACATCCTAAAC AGAAACAGAGGAGCTATCGCACTCTCGGGGGCTGCTGCTATGCAGAGTATTACTACAGGTATTGGACAAATGAACATTGGAGAGAGCGACGAGTTCTACA ACTTCCGTATCTCTCTGCCTGGTGTTTCTGGCAATGACGGGAGCTTCAGGTGTCAAATCGATCCAAGTGGGTTCGTAGAGATACAAGGGGTGACGAACAC CGGAGAACAGGTGGTCGAAAAACCACCGCAAGTCTTCTTCATGGAATCTCGAAACCTCTGCCCGCCAGGCCCCTTCTCCATGAAGTTCAGGCTTCCCGGT CCAGTTTTTCCGGAACATTTCAGGAGCTCTTTTGCTGATGTTGCTGGTCTTTTTCGCCTAGGCACTCCCGGTGTTCTTTACTTTCAGCTTTTAAATGCCG AGGGAAGCAGCGTATTTCATGATCCTATCGAGAAGATCCTTCCTCTGTTCTACAAAGAAGTCCACTCTAACCCTGCTGATCCTACTGTGGTCAACACAAA GCTTATCAACCTCGAGAACAACCATTTCCACGGCAGCCTTCCGCTAGAGATCGGGAATCTTCTCCAGCTCGAGGAATTCAACCTCACCAGCAACTCTTTT GACGGTGTCATCCCTGTCAACCTGACGAGATGCTCCAACCTCAGGATCCTGAGGCTTCAGAATAATTTCCTGAAAGGAAACATACCTGCCGAAATTGGAT CTTTGTTGAAGCTGGAGATCATCAGGTTCGGGATCAATAACCTGACAGGAGAAATTCTGCATTCGGTTGGGAACCTGACCAACCTGATCGATTTCGGAGC TGCTTATCTCAACTTGGTGGGCACCATTCCCAAAAGCTGA
AA sequence Show only first row Show all	>Lus10035725 pacid=23147431 polypeptide=Lus10035725 locus=Lus10035725.g ID=Lus10035725.BGIv1.0 annot-version=v1.0 MRKAEVSTNNFIVLRSSTKRAHSQPESINPEQVYDAPPLNVPPLNAVPLNYFDPFVADAGTNDADASTGDLPVEPAPAEDPSLVFFPTGTTEAEYANILN RNRGAIALSGAAAMQSITTGIGQMNIGESDEFYNFRISLPGVSGNDGSFRCQIDPSGFVEIQGVTNTGEQVVEKPPQVFFMESRNLCPPGPFSMKFRLPG PVFPEHFRSSFADVAGLFRLGTPGVLYFQLLNAEGSSVFHDPIEKILPLFYKEVHSNPADPTVVNTKLINLENNHFHGSLPLEIGNLLQLEEFNLTSNSF DGVIPVNLTRCSNLRILRLQNNFLKGNIPAEIGSLLKLEIIRFGINNLTGEILHSVGNLTNLIDFGAAYLNLVGTIPKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54850			HSP20-like chaperones superfam...		Lus10035725 [exp]	0	1
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Lus10031700 [exp]	2.0	0.8659
AT4G00250	GeBP		DNA-binding storekeeper protei...		Lus10007188 [exp]	2.2	0.8661
AT3G58660			Ribosomal protein L1p/L10e fam...		Lus10005380 [exp]	2.4	0.8520
AT1G17070			GC-rich sequence DNA-binding f...		Lus10002252 [exp]	6.2	0.7747
AT4G00390	GeBP		DNA-binding storekeeper protei...		Lus10018859 [exp]	6.6	0.8397
AT4G14660		NRPE7	RNA polymerase Rpb7-like, N-te...		Lus10023619 [exp]	10.9	0.7711
AT4G26810			SWIB/MDM2 domain superfamily p...		Lus10038799 [exp]	12.4	0.8059
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Lus10031121 [exp]	13.0	0.8211
AT5G64670			Ribosomal protein L18e/L15 sup...		Lus10032390 [exp]	13.0	0.8270
AT1G62830		ATLSD1, ATSWP1,...	ARABIDOPSIS LYSINE-SPECIFIC HI...		Lus10012283 [exp]	13.4	0.7846

Compare expression of checked genes

Lus10035725 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.