Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 612 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 590 / 0 EFR EF-TU receptor (.1) AT3G47090 585 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 571 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 552 / 3e-177 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 405 / 1e-122 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 369 / 6e-108 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G07280 363 / 5e-106 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G20140 360 / 2e-104 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 342 / 3e-98 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033330 [exp] 884 / 0 AT3G47570 783 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033329 [exp] 883 / 0 AT3G47570 794 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033362 [exp] 874 / 0 AT3G47570 784 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033384 [exp] 854 / 0 AT3G47570 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031043 [exp] 849 / 0 AT3G47570 756 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035429 [exp] 838 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033363 [exp] 823 / 0 AT3G47570 758 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037310 [exp] 802 / 0 AT3G47570 744 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004388 [exp] 727 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G099100 [exp] 696 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 687 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 682 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 682 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102900 [exp] 679 / 0 AT3G47570 843 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 679 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G044500 [exp] 678 / 0 AT3G47570 764 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 669 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 669 / 0 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033700 [exp] 668 / 0 AT3G47570 799 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10035726 pacid=23147366 polypeptide=Lus10035726 locus=Lus10035726.g ID=Lus10035726.BGIv1.0 annot-version=v1.0 ATGATGAAGCTTCTTTTCATTACTTCATTGCTACTACTCCTTCTGTGGCCACAGCCAGCCGCAGCTGATCATGTTCCAAGCAACGAAACCGACCGACTCG CCCTGCTCCACTTCAAGCAAGCAATCACCCGCGACCCGAATGGGATCCTCACTTCCTGGAATCAATCATCCCATTTCTGCCACTGGTTTGGAGTCACTTG CCACCCGATTCGCAACCGAGTCGCCTCCCTCGTCCTCCCTGGCCAAAATCTCGCCGGCACTCTCTCCCCCCATATATCGAATCTCACTTTCCTAAACTCC ATCAACCTTAACTCCAACTTCCTACGTGGTCTGATCCATCCTCAACTCGGCAACTTACGCCGCCTGCAGAACCTGAATCTCTCCCACAACTTGTTCCAAG GTGAAATCCCAATCAACCTCACTCTTTGCTCCAACCTCAGGTTTCTTCTGTTGGGGGATAATAACCTGACAGGTCAAATCCTTCCTGAAATCGGATCGCT CAGATTCCTGCAGCGTCTGAGACTCGGAACGAACAATCTGACAGGAAACCTCCCTGCTTCTTTGGGGAACCTCTCCATGCTTGTTAATTTCGGCGCTGCG TATAATCAGTTAGACGGTGAAGTTCCTGAAACCTATGGCAGACTTTCGAGGATGGAATTATTCGCTGTCGGGATCAATCGCCTTTCCGGCACCATTCCTG CGTCGATTCTCAACCTCTCGTCACTCCAGATACTGACATTCACTGACAATCAGATGGAAGGGGATTTGCCGGAGGATATTGGTCTCACTCTGCCTAATCT CCAGGCTTTTGCTATTTCCAGGAATCGGTTTACAGGAAAACTCCCTGTCTCGTTTTGCAATGCCTCCAACCTGGAAATGCTGAATATGAATTGGAATCAA TTCCATGGCCGAATCCCTAACTGCCTTGGGAATTTGCTCAGCTTTCAAGATCTTGACATTGGTGCTACTAACCTTGGAAGCAATTCTACCGGGGACTTTG ATTTCATCAACTCGCTAGCGAATTGTAGCCAGTTGAGACACCTTGGTGTCGCGGTAAACAATTTGGGAGGCCGGCTTCCCGATTCGATAGGGAATTTATC AGCAGCCACGTTCGCGGATCTCTGGATTGATACGAACTACATCACGGGCGAAATTCCTGCAGGATTGGAGAATCTGAAAGGGTTATCTGATTTGGACTTG GCGGATAACGTTTTCTCCGGGAAAATTCCGCCTTACATGGGGAATTTCCCCAATTTGCAAAGACTGGAATTAGGAAGTAACCAACTCCAAGGTCAGATCC CATCCTCCTTATGCAACGTTTCCCAGTTATTCGAGCTGAACATTTCGCATAATCTGTTACAAGGGGATCTCCCTCCGAGCATTGGAAGCTGTCAGAAGCT GACTACGTTGGATGTTTCTGGAAACCAACTTACAGGATCCATCCCGGTAGAGCTACTCCGAATTTCCTCCTTGTCAAGTACGCTAAACTTGTCGCGTAAC TCGTTTACCGGCCATCTACAGCCGGCTACAGGTGGCTGGAATCTACCATCTCTAACAGGAATAGATATTTCCTACAACAACCTGACAGGTGAAATTCCTG CAGCAATCGGCGAATGTAAATCCCTCGTGTCTCTATACCTCCAGAGCAACTCCTTCAACGGGAGCATTCCTGAAGCAGCTTTGGCATCTTTGAGAGGAAT ACAATACATCGATCTCTCCCGAAACAATTTAACCGGACCGATCCCTGCTCGTCTACAGACCATGCCTAGTCTTCAGTACTTGAATCTTTCTTTCAATGCT CTTGTTGGAGAGGTTCCAACGAAAGGGATATTCACAAACGCAAGCTCGATATCATTGACCGGGAACGAAATGTTGTGTGGTGGAGTCTCGATGCTCCATC TCCCTAAATGCAGAAATGCTTTCTCAAAATCTGTCAAAGTTAAGTTGGCAGCCATTATTTCCGTCTTGGTCTTTCTGTCCTTAATCTTGGGAGGAGCATT ATCGTTCTACATGAGACGGAGATTAGCAAAGCGAAAGAAGGTTGAAGAGAACGAGCCAGGGAACTTGGAGAAAGTGTCGTACAAAGATCTCCATCAAGCA ACTAACGGATTCTCTTCGGACAACATAATCGGATCAGGCGGGTTCGGGACTGTGTTTAAAGGGGTACTGGTACTCGAGAATAATAATACTGAAACTTCTG TAGCTGTTAAAGTGTTGAAAAATACAGGAGACAAGAGAGTAGGTAGGAGTCTTAAAGCTGAGTGCAAGGCGTTGAGAAATGTTCGTCATCGGAATCTTGT GAGGCTGATAACTTACTGCTCCAGCTTGGACTACAAGGGTAATGAGTTCAAAGCCTTGGTGTACCCGTTCATGGAGAACGGAAGCCTCGAAAAATGGCTT CACCACTCGGAACAAGTCACCAGCAGCTTAAGCTTGATACAAAGGATTAACATTGCATTGGATGTGGCGACCGCTCTGCACTATCTGCACGAGCTGAGTG GTGGGGTGTCGATAGCGCATTGTGATCTGAAGCCGAGCAATGTACTGTTGGATGGAGACATGGTGGCTCATGTTGGCGATTTTGGCATGGCGAGGATTCT ATCATCGACAGCAGAAATTGGTGTTGCCCAGAGTGATGAAACAGGCAGTACTGGGACTGTAAAAGGAACTATCGGATATGCTCCACCAGAGTATGGAACG AGTGTAACGGAAGGTACGAAAGAAGGGGATGTGTACAGCTATGGGATCCTCGTGATGGAAATGTTCAGCGGGAAGAGACCCACAGAGGAGATGTTTGGAG GCAGGAGCTCCTGGTTGAGTTTGAGAGAGTGGGTGAAAGCTGCATTGCCAAATGAGATATGCAGTAGGGTGTTGGATCCAAAGCTTTGTTTTGAACACGA TAGGACAACAACGGGGGAAGCGAAAGAGCAGATGAACAAGTGTCTGGTGTCGCTGCTTGAAATTGGAGTAGCTTGCTCTGCTCACTCGCCTCGAGAGCGT ATGAAAATGGCTGATGTTACGCTTGCAGTGTCTTCGATCAGGGATTCTTTCTTACGATATTCAATCCCCCCACGCAGAGCGCAAACAAGATGTTTAATCG GAGCTCAGGTAGTGCCTCGTTGTTCATCCGTGAATGAAGTTATCAGTATGTACCCTGTAGATGGCGACGACAAGGAGGTTGGCCAAGCCGCAGGGAGTAC CTTGTTTTCCGGGACCATACCGGATTCCTTCTGCAACGCCACGCAGCTGCGAATGCTCGACATGAATGAGAACAGTTTCGTGGGACGAATTCCCAATCTT GGGAATTTACCTCGTCTGAACTGGCTGTCAGCCGGATTCAACCGTCTTGGCCAGAATTCGACAGGTGATTTCGAGTTCTTAACCGGCTTACAGAATGATA CTGAAATGCAACGGTTTGTCATAAAGGGTAACAACTTCAGAGGCACTTTCCTAGCTAGCTCCATGGCTAACCTCTCAGTCCAACTAACGAAACTCAACGT TTCATTGAATCATATACGAGGACGTATTCCTTCCGGTTTGGACAAATTAGTCAACTTAGACCTCATGGATCTATCATTTAACCTCATGCAGGGCGCTATT CCGCCCTACTTTACAAAGCTCCACAACTTGCGGAGCTTGCATTTGGCAGGAAACCGATTCACAGGTCGGATTCCCCCCTCCATTGGCAACCTTACTCAGT TGCTTGAACTAGACATGTCCAGCAACAGACTTGAGACGTCAGTTCCTTCGAGTCTAGGGTCGTGTACCGAGTTGATCTACTTTGACATTTTGAGTAACAA CCTTGGTGGAAGTCTACCTCAGGAGGTGTTCAATCTTATTATGGGTCCCTCGAGGATTCTGACAGACGCTCAAACCAAAGCCAAATCTAAGAGTTATGCA GAACAGATTCACACGGCCAGATCACATAGCAGTGGAAGAATCAAATCATTGACAAAATAA
AA sequence Show only first row Show all	>Lus10035726 pacid=23147366 polypeptide=Lus10035726 locus=Lus10035726.g ID=Lus10035726.BGIv1.0 annot-version=v1.0 MMKLLFITSLLLLLLWPQPAAADHVPSNETDRLALLHFKQAITRDPNGILTSWNQSSHFCHWFGVTCHPIRNRVASLVLPGQNLAGTLSPHISNLTFLNS INLNSNFLRGLIHPQLGNLRRLQNLNLSHNLFQGEIPINLTLCSNLRFLLLGDNNLTGQILPEIGSLRFLQRLRLGTNNLTGNLPASLGNLSMLVNFGAA YNQLDGEVPETYGRLSRMELFAVGINRLSGTIPASILNLSSLQILTFTDNQMEGDLPEDIGLTLPNLQAFAISRNRFTGKLPVSFCNASNLEMLNMNWNQ FHGRIPNCLGNLLSFQDLDIGATNLGSNSTGDFDFINSLANCSQLRHLGVAVNNLGGRLPDSIGNLSAATFADLWIDTNYITGEIPAGLENLKGLSDLDL ADNVFSGKIPPYMGNFPNLQRLELGSNQLQGQIPSSLCNVSQLFELNISHNLLQGDLPPSIGSCQKLTTLDVSGNQLTGSIPVELLRISSLSSTLNLSRN SFTGHLQPATGGWNLPSLTGIDISYNNLTGEIPAAIGECKSLVSLYLQSNSFNGSIPEAALASLRGIQYIDLSRNNLTGPIPARLQTMPSLQYLNLSFNA LVGEVPTKGIFTNASSISLTGNEMLCGGVSMLHLPKCRNAFSKSVKVKLAAIISVLVFLSLILGGALSFYMRRRLAKRKKVEENEPGNLEKVSYKDLHQA TNGFSSDNIIGSGGFGTVFKGVLVLENNNTETSVAVKVLKNTGDKRVGRSLKAECKALRNVRHRNLVRLITYCSSLDYKGNEFKALVYPFMENGSLEKWL HHSEQVTSSLSLIQRINIALDVATALHYLHELSGGVSIAHCDLKPSNVLLDGDMVAHVGDFGMARILSSTAEIGVAQSDETGSTGTVKGTIGYAPPEYGT SVTEGTKEGDVYSYGILVMEMFSGKRPTEEMFGGRSSWLSLREWVKAALPNEICSRVLDPKLCFEHDRTTTGEAKEQMNKCLVSLLEIGVACSAHSPRER MKMADVTLAVSSIRDSFLRYSIPPRRAQTRCLIGAQVVPRCSSVNEVISMYPVDGDDKEVGQAAGSTLFSGTIPDSFCNATQLRMLDMNENSFVGRIPNL GNLPRLNWLSAGFNRLGQNSTGDFEFLTGLQNDTEMQRFVIKGNNFRGTFLASSMANLSVQLTKLNVSLNHIRGRIPSGLDKLVNLDLMDLSFNLMQGAI PPYFTKLHNLRSLHLAGNRFTGRIPPSIGNLTQLLELDMSSNRLETSVPSSLGSCTELIYFDILSNNLGGSLPQEVFNLIMGPSRILTDAQTKAKSKSYA EQIHTARSHSSGRIKSLTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10035726 [exp]	0	1
AT2G01170		BAT1	bidirectional amino acid trans...		Lus10028561 [exp]	8.4	0.7663
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10033519 [exp]	19.5	0.7540
AT1G80320			2-oxoglutarate (2OG) and Fe(II...		Lus10041279 [exp]	19.7	0.8114
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10041280 [exp]	42.7	0.7908
AT5G52260	MYB	ATMYB19	myb domain protein 19 (.1)		Lus10005739 [exp]	45.2	0.6944
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10026496 [exp]	45.5	0.7808
AT3G23130	C2H2ZnF	FLO10, FON1, SU...	SUPERMAN, FLORAL ORGAN NUMBER ...		Lus10022206 [exp]	51.2	0.6853
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10037137 [exp]	58.4	0.6968
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10019669 [exp]	137.7	0.7176
AT5G10530			Concanavalin A-like lectin pro...		Lus10019233 [exp]	184.0	0.6859

Compare expression of checked genes

Lus10035726 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.