Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51590 849 / 0 MNS1, MANIB ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) AT3G21160 832 / 0 MNS2, MANIA ALPHA-MANNOSIDASE IA, alpha-mannosidase 2 (.1) AT1G30000 349 / 9e-113 MNS3 alpha-mannosidase 3 (.1) AT1G27520 198 / 6e-56 Glycosyl hydrolase family 47 protein (.1) AT5G43710 195 / 1e-54 Glycosyl hydrolase family 47 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037312 [exp] 1112 / 0 AT1G51590 865 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10034820 [exp] 1023 / 0 AT1G51590 887 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10033368 [exp] 871 / 0 AT1G51590 747 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10042830 [exp] 344 / 8e-111 AT1G30000 846 / 0.0 alpha-mannosidase 3 (.1) Lus10028127 [exp] 234 / 5e-71 AT1G30000 622 / 0.0 alpha-mannosidase 3 (.1) Lus10042143 [exp] 196 / 4e-55 AT1G27520 886 / 0.0 Glycosyl hydrolase family 47 protein (.1) Lus10021888 [exp] 191 / 3e-53 AT5G43710 853 / 0.0 Glycosyl hydrolase family 47 protein (.1) Lus10041170 [exp] 189 / 3e-52 AT5G43710 885 / 0.0 Glycosyl hydrolase family 47 protein (.1) Lus10004233 [exp] 74 / 1e-13 AT1G27520 515 / 0.0 Glycosyl hydrolase family 47 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G007500 [exp] 932 / 0 AT1G51590 885 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Potri.018G141100 [exp] 832 / 0 AT1G51590 813 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Potri.004G132300 [exp] 353 / 6e-114 AT1G30000 934 / 0.0 alpha-mannosidase 3 (.1) Potri.015G071400 [exp] 196 / 4e-55 AT1G27520 931 / 0.0 Glycosyl hydrolase family 47 protein (.1) Potri.008G160900 [exp] 194 / 4e-54 AT5G43710 908 / 0.0 Glycosyl hydrolase family 47 protein (.1) Potri.012G076600 [exp] 139 / 8e-35 AT1G27520 657 / 0.0 Glycosyl hydrolase family 47 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF01532 [flax] [poplar] Glyco_hydro_47 Glycosyl hydrolase family 47
Representative CDS sequence Show only first row Show all	>Lus10035727 pacid=23147435 polypeptide=Lus10035727 locus=Lus10035727.g ID=Lus10035727.BGIv1.0 annot-version=v1.0 ATGGGGAGGAGCAGCAGATCGTCAGCTTCTTCGTCATCGTCGTCTTCCTCCTCGACATGGAGGTACTGCAATCCTTCTTATTACCTGAAGCGTCCCAAGC GGTTGGCTATGCTCTTCCTCGCGTTTGTTTGCGCCACCATGTTCGTCTGGGATCGCCAGACTCTCGTTCGGGAACACGAGGTGGAAGTTGTGAAATTATA TGAAGAAGTGAACCAGTTAAAAACGATACTAGAAGAGTTAAAGATTACTCAAGGTGATGAAGTCGGTTCAGTGCGTAAATCCTCCAAAGTCTCCCAGAAG GCTCCTCCAGAGGACCCAGTTGATATTCATCGAAGAGAGAAAGTAAGAGAAGCAATGATTCATGCTTGGAGTTCATATGAAAAATATGCATGGGGTAATG ATGAACTTCAGCCTCAAACAAAGAATGGCGTAGACAGCTTTGGTGGTCTTGGAGCAACACTAATAGATGCTCTTGATACACTATATATAATGGGTCTGGA TGAGCAGTTCCAGAGAGCAAGAGAGTGGGTTGCAAATTCGTTGGATTTCAACAAGGATTATGATGCGAGTGTATTTGAGACAACCATAAGAGTAGTAGGT GGTCTACTCAGTGCATATGATCTTTCCGGGGACAAAGTTTTCATTGAAAAAGCAAAGGACATTGCTGACAGGTTGCTGCCTGCATGGGATACACCTACTG GCATACCTTATAACGTCATCAATTTGGAAAATGGAAATCCTCATAACCCTGGTTGGACTGGTGGATCCAGTATTCTTGCAGATTCTGGTACTGAACAGCT TGAATTTTTTGCTCTCTCACAAAGGACGGGAGACCCAAAGTATCAACAAAAGGCTGAAAAGGTTATCCTGGAGCTAAATAAAACCTTCCCTGCTGACGGG CTACTTCCAATCTATATAAGTCCCGACACTGGAATTGCTTCAAGTACCACGATAACTTTTGGTGCGATGGGTGACAGCTTTTATGAGTATCTACTCAAAG TTTGGATTCAAGGAAATAGAACTTCAGCTGTGAAACTTTACAGAGACATGTGGGAGAAATCAATGAAGGGTTTGCTAAGTTTAATTAGAAGAAGTTCACC TTCGTCTTTCACATACATTTGTGAAAAAAGTGGTGATTGGTTGACAGACAAGATGGATGAATTAGCATGCTTTGCTCCGGGGATGCTGGCCTTGGGATCA TCTGGTTATGAGCAAGCTGAATCTGAGAGAATGCTGTCACTTGCTGAAGAGCTTGCTTGGACGTGTTACAACTTCTACCAATCAACACCAACAAAATTGG CTGGAGAGAACTATTTTTTCCGATCTGGACAGGATATGAGTGTCGGTACATCTTGGAACATATTGAGGCCTGAAACTGTGGAGTCGCTCTTTTACCTCTG GCGTTTAACGGGCAACAAAACATACCAGGAGTGGGGTTGGAACATATTCCAAGCATTTGAAAAGAACTCGCGTGTTGAGGGTGGATACGTTGGACTGAAG GATGTGAATACTGGCATAAAAGACAACATGATGCAAAGCTTCTTCCTTGCCGAGACCCTCAAGTATCTGTACCTCCTATTCTCGCCGACATCTGTCATCT CATTAGACGAATGGGTTTTCAACACGGAAGCTCACCCGTTAAGAATCACGAACCTCCAGGACGGAGAAACTAATGGATACACAGACGACAAACTAACTAG GTCTCGGGGCAGGAAAGAAGGGCAATGGTGA
AA sequence Show only first row Show all	>Lus10035727 pacid=23147435 polypeptide=Lus10035727 locus=Lus10035727.g ID=Lus10035727.BGIv1.0 annot-version=v1.0 MGRSSRSSASSSSSSSSSTWRYCNPSYYLKRPKRLAMLFLAFVCATMFVWDRQTLVREHEVEVVKLYEEVNQLKTILEELKITQGDEVGSVRKSSKVSQK APPEDPVDIHRREKVREAMIHAWSSYEKYAWGNDELQPQTKNGVDSFGGLGATLIDALDTLYIMGLDEQFQRAREWVANSLDFNKDYDASVFETTIRVVG GLLSAYDLSGDKVFIEKAKDIADRLLPAWDTPTGIPYNVINLENGNPHNPGWTGGSSILADSGTEQLEFFALSQRTGDPKYQQKAEKVILELNKTFPADG LLPIYISPDTGIASSTTITFGAMGDSFYEYLLKVWIQGNRTSAVKLYRDMWEKSMKGLLSLIRRSSPSSFTYICEKSGDWLTDKMDELACFAPGMLALGS SGYEQAESERMLSLAEELAWTCYNFYQSTPTKLAGENYFFRSGQDMSVGTSWNILRPETVESLFYLWRLTGNKTYQEWGWNIFQAFEKNSRVEGGYVGLK DVNTGIKDNMMQSFFLAETLKYLYLLFSPTSVISLDEWVFNTEAHPLRITNLQDGETNGYTDDKLTRSRGRKEGQW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10035727 [exp]	0	1
AT3G11560			LETM1-like protein (.1.2.3.4)		Lus10021329 [exp]	5.6	0.8403
AT4G22200		AKT3, AKT2/3	potassium transport 2/3 (.1)		Lus10015474 [exp]	6.3	0.7866
AT3G15090			GroES-like zinc-binding alcoho...		Lus10013106 [exp]	10.5	0.7838
AT3G11560			LETM1-like protein (.1.2.3.4)		Lus10017005 [exp]	11.7	0.8278
AT1G04910			O-fucosyltransferase family pr...		Lus10017105 [exp]	12.2	0.8023
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10037312 [exp]	13.9	0.6974
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10019386 [exp]	14.7	0.8073
AT5G20380		PHT4;5	phosphate transporter 4;5 (.1)		Lus10038110 [exp]	16.2	0.8054
AT5G08500			Transmembrane CLPTM1 family pr...		Lus10019695 [exp]	23.7	0.8000
AT1G69360			Plant protein of unknown funct...		Lus10037122 [exp]	28.4	0.7820

Compare expression of checked genes

Lus10035727 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.