Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01470 333 / 1e-111 ATSEC12, STL2P SEC12P-like 2 protein (.1) AT5G50650 325 / 2e-108 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50550 325 / 2e-108 Transducin/WD40 repeat-like superfamily protein (.1) AT3G52190 151 / 2e-41 AtPHF1, PHF1 phosphate transporter traffic facilitator1 (.1) AT1G73720 47 / 2e-05 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) AT1G15440 46 / 4e-05 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) AT4G04940 45 / 0.0001 transducin family protein / WD-40 repeat family protein (.1) AT5G14050 45 / 0.0001 Transducin/WD40 repeat-like superfamily protein (.1) AT3G42660 45 / 0.0001 transducin family protein / WD-40 repeat family protein (.1) AT1G36070 44 / 0.0001 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037313 [exp] 785 / 0 AT2G01470 328 / 2e-109 SEC12P-like 2 protein (.1) Lus10017451 [exp] 155 / 4e-43 AT3G52190 516 / 0.0 phosphate transporter traffic facilitator1 (.1) Lus10037923 [exp] 151 / 2e-41 AT3G52190 497 / 2e-176 phosphate transporter traffic facilitator1 (.1) Lus10028830 [exp] 150 / 4e-41 AT3G52190 518 / 0.0 phosphate transporter traffic facilitator1 (.1) Lus10038651 [exp] 145 / 5e-39 AT3G52190 484 / 2e-171 phosphate transporter traffic facilitator1 (.1) Lus10031629 [exp] 56 / 4e-08 AT1G71840 488 / 2e-172 transducin family protein / WD-40 repeat family protein (.1) Lus10034114 [exp] 54 / 2e-07 AT1G15440 1318 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Lus10038425 [exp] 52 / 9e-07 AT1G73720 956 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) Lus10023381 [exp] 51 / 1e-06 AT1G73720 953 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G130300 [exp] 479 / 8e-169 AT2G01470 355 / 2e-120 SEC12P-like 2 protein (.1) Potri.010G111800 [exp] 472 / 4e-166 AT2G01470 346 / 7e-117 SEC12P-like 2 protein (.1) Potri.010G232400 [exp] 164 / 3e-46 AT3G52190 511 / 0.0 phosphate transporter traffic facilitator1 (.1) Potri.008G029200 [exp] 163 / 4e-46 AT3G52190 489 / 2e-173 phosphate transporter traffic facilitator1 (.1) Potri.003G060500 [exp] 55 / 7e-08 AT1G15440 1349 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Potri.001G173500 [exp] 52 / 5e-07 AT1G15440 1342 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Potri.011G156900 [exp] 52 / 7e-07 AT1G73720 948 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) Potri.012G065200 [exp] 45 / 7e-05 AT3G42660 1107 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.006G078900 [exp] 44 / 0.0002 AT4G04940 1394 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.002G094100 [exp] 44 / 0.0002 AT1G78070 655 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10035728 pacid=23147542 polypeptide=Lus10035728 locus=Lus10035728.g ID=Lus10035728.BGIv1.0 annot-version=v1.0 ATGGCCAAAGGCGAGGACCTGGATTCTCCGGCGACGCAGAAATATGGCATCCCTTTCTATTCCGCTGCTTGGATTCCATACAAGGAGCTGAAATCCAAGC TCCAGCCTAAGGAGGAAGGCCGATCTCAAGACGATCAGGAAGATTCTATTAAGGACTCTGCCGCTGCCACCACATCTGAGAAAAATGAAAACTCCGTGAA GGAACCAGAAACGCAGAAGACTAATGGACCTGATCCTGCGTCGGAATATTATGTGGTCTTGGCAGGTGGTGGTGGTGAAGGCCGAAGTGGTATAGCGAAT GCAATTGTCCTTGCTCATTTCGATCTTGCTTCTAGTTCTCTATCGCCGCAGCCCGTAACTAAACATGTTCTTGGTTCGGAATTGCCATATAGAATGGCTG TTCACCCAGGGGGTGATGGAATAATATGTGCGATGCAAAACAGTTGCAGGTTCTTTGAGTGGGATGAGATCATGGAGAATGGAAGCAGCAAACTTGATGT TAAAACATCTGAGAAAGCCCTAGACCAGTTACAAGATGTCGGACAACAATTAGCATTGGCTTATGACACTGACGGTTCCACTCTGGCAGTTGGTGGTGAG GAGGGCGACCTGAGGATTTTTAAATGGCCAAGCATGAAAGAAGTTTTGAATGAGACTCAAGCACATTCTTCCGTAAAGGACTTGTGTTTCAGCCCTGATG GCAAGTTTCTCGTCTCTCTTGGGGGTCGTGGTCCTGGTAGGGTGTGGGATGTACCTTCAGCAAAAGTTATAGCTTCATTGTCAAATACAAGTGATGAGGT GTTTGCCTCTTGCAGGTTTTTGCAAAGTAGCGATAATTCTCTGGTTCTCTATATTGCTGCCATAACAGGAAGAGGTGCAAGTATAGTGACGTGGAGCACA AGCTCTTGGAAACGTTTACGCTCTAAGCATGTAGTTGGGGATTCCATTTCTTCCTTCAACGTCTCACCCGATGGAAGGCTCCTTGCTATGGGTACAGCTC GAGGAGATGTGGTGGTCGTAGATTCATCCAAGATGGGGGTTCAGATGGTTGTGAAAAAAGCACATCTCGGCTTTGTAACAGCATTGGCCTTCTCACATGA CTCAAAGGCACTGGCATCGACTTCTATGGATTCAAGCGCACGGGTGACGTTGATAAAGGAGAAGAAAAGTGGTGGAGGGAATTGGTGGGTTATAGTGATG GTGATTTTACTAGCAATAATTGCATATTTCCTGAAGAAACAAGGCCTTCTTCCTGACATCATCGACTAG
AA sequence Show only first row Show all	>Lus10035728 pacid=23147542 polypeptide=Lus10035728 locus=Lus10035728.g ID=Lus10035728.BGIv1.0 annot-version=v1.0 MAKGEDLDSPATQKYGIPFYSAAWIPYKELKSKLQPKEEGRSQDDQEDSIKDSAAATTSEKNENSVKEPETQKTNGPDPASEYYVVLAGGGGEGRSGIAN AIVLAHFDLASSSLSPQPVTKHVLGSELPYRMAVHPGGDGIICAMQNSCRFFEWDEIMENGSSKLDVKTSEKALDQLQDVGQQLALAYDTDGSTLAVGGE EGDLRIFKWPSMKEVLNETQAHSSVKDLCFSPDGKFLVSLGGRGPGRVWDVPSAKVIASLSNTSDEVFASCRFLQSSDNSLVLYIAAITGRGASIVTWST SSWKRLRSKHVVGDSISSFNVSPDGRLLAMGTARGDVVVVDSSKMGVQMVVKKAHLGFVTALAFSHDSKALASTSMDSSARVTLIKEKKSGGGNWWVIVM VILLAIIAYFLKKQGLLPDIID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01470		ATSEC12, STL2P	SEC12P-like 2 protein (.1)		Lus10035728 [exp]	0	1
AT4G38640			Plasma-membrane choline transp...		Lus10025051 [exp]	4.2	0.8538
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10022804 [exp]	4.9	0.8852
AT4G17080			Histone H3 K4-specific methylt...		Lus10028158 [exp]	6.0	0.8372
AT3G63220			Galactose oxidase/kelch repeat...		Lus10022061 [exp]	6.6	0.8881
AT5G26751		ATSK11 ,SK 11	ARABIDOPSIS THALIANA SHAGGY-RE...		Lus10031440 [exp]	7.1	0.8725
AT5G63910		FCLY	farnesylcysteine lyase (.1)		Lus10010948 [exp]	11.0	0.8515
AT4G29960			unknown protein		Lus10001629 [exp]	11.8	0.8802
AT3G49390		CID10	CTC-interacting domain 10 (.1....		Lus10008851 [exp]	13.7	0.8881
AT1G63220			Calcium-dependent lipid-bindin...		Lus10002235 [exp]	16.2	0.8170
AT5G07120		SNX2b	sorting nexin 2B (.1)		Lus10042247 [exp]	16.9	0.8519

Compare expression of checked genes

Lus10035728 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.