Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09770 272 / 4e-95 Ribosomal protein L17 family protein (.1) AT5G64650 270 / 2e-94 Ribosomal protein L17 family protein (.1) AT3G54210 116 / 5e-33 Ribosomal protein L17 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037314 [exp] 331 / 2e-118 AT5G09770 274 / 6e-96 Ribosomal protein L17 family protein (.1) Lus10007002 [exp] 117 / 3e-33 AT3G54210 244 / 2e-82 Ribosomal protein L17 family protein (.1) Lus10000382 [exp] 117 / 4e-33 AT3G54210 245 / 3e-82 Ribosomal protein L17 family protein (.1) Lus10006999 [exp] 117 / 2e-32 AT3G54210 248 / 1e-82 Ribosomal protein L17 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G107100 [exp] 284 / 8e-100 AT5G64650 258 / 1e-89 Ribosomal protein L17 family protein (.1) Potri.005G061700 [exp] 273 / 1e-95 AT5G64650 257 / 4e-89 Ribosomal protein L17 family protein (.1) Potri.006G113500 [exp] 117 / 2e-33 AT3G54210 253 / 1e-85 Ribosomal protein L17 family protein (.1) Potri.016G143100 [exp] 116 / 6e-33 AT3G54210 258 / 7e-88 Ribosomal protein L17 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01196 [flax] [poplar] Ribosomal_L17 Ribosomal protein L17
Representative CDS sequence Show only first row Show all	>Lus10035729 pacid=23147419 polypeptide=Lus10035729 locus=Lus10035729.g ID=Lus10035729.BGIv1.0 annot-version=v1.0 ATGACAAAGTTCAGGAAGCTGAATCGGCCGGCGGCCCACCGTATGGCCATGTTCAGAACTATGGTTTCACAACTGGTGAAGCACGAGCGCATTGAAACCA CCGTTGCCAAGGCAAAAGAAATACGCAGGCTTGCTGATAATATGGTGCAGCTTGGCAAAGAGGGTACCCTTCATGCTGCAAGGCAAGCTGGTGCTTTCGT GAGAGGAGATGATGTCATTCACAAACTATTTACAGAGCTAGCATATCGATACAAGGACAGAGCTGGTGGTTACACAAGGATTCTAAGAACACGCATTAGA GTCGGTGACGCTGCACCAATGGCCTACATTGAGTTAATCGACAGAGAAAATGAACTGAGACAATCCAAGCCACCGGTCCCTCAGGCGCCTCAGAGAGCTG CTTTGGATCCATGGATGAGATCCCAGCTCACCAGGAATTTTGCACCACCCAAGGAGGAAAAGAAATCTGGATGTGATTCCGACATATGA
AA sequence Show only first row Show all	>Lus10035729 pacid=23147419 polypeptide=Lus10035729 locus=Lus10035729.g ID=Lus10035729.BGIv1.0 annot-version=v1.0 MTKFRKLNRPAAHRMAMFRTMVSQLVKHERIETTVAKAKEIRRLADNMVQLGKEGTLHAARQAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRILRTRIR VGDAAPMAYIELIDRENELRQSKPPVPQAPQRAALDPWMRSQLTRNFAPPKEEKKSGCDSDI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09770			Ribosomal protein L17 family p...		Lus10035729 [exp]	0	1
AT5G09770			Ribosomal protein L17 family p...		Lus10037314 [exp]	1.4	0.9082
AT5G66860			Ribosomal protein L25/Gln-tRNA...		Lus10009338 [exp]	12.6	0.9101
AT5G19300			unknown protein		Lus10034063 [exp]	18.8	0.8955
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10034685 [exp]	20.4	0.9051
AT5G66540			unknown protein		Lus10001234 [exp]	20.8	0.8701
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10010763 [exp]	22.8	0.9075
AT1G09690			Translation protein SH3-like f...		Lus10029302 [exp]	25.4	0.8985
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Lus10027503 [exp]	29.0	0.8961
AT2G15000			unknown protein		Lus10026596 [exp]	33.3	0.8893
AT3G04680		CLPS3	CLP-similar protein 3 (.1.2)		Lus10015355 [exp]	34.4	0.8381

Compare expression of checked genes

Lus10035729 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.