Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G252700 [exp] 51 / 1e-08 AT1G16850 54 / 2e-09 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035730 pacid=23147350 polypeptide=Lus10035730 locus=Lus10035730.g ID=Lus10035730.BGIv1.0 annot-version=v1.0 ATGTCGACCAAGTCTGCTATTTTCATTCTCTTCTGCTGCTCCTGCCTCTTGCTTAATCTCGTAATCACTGCTCACGAACAAGACCAACCAAAGTCAGCCC CCGGCACCGGCGCCGGCGCTGCTGCACCACCTACTTATTTCGACAGAATCAAGGCCGTTGCCAGCTGGGTTCAGACCCGCTTCTTTCCTCCTGCAACAGA CAAGATGATGACCGGCGTAAAAGAAGAAGATGAAGAAAAAGGAGGCGGAGGCGGCGGAAGAGTGAAAGAGGCGGTGGCGAAGAGTATAGAGAAGGGCAAA GAAACACTAGAAGGCACTGCAAAATCAGCCGCCAGGATGGCAACTCAAACTGCACACGATGCCAAGGAGAAGGTCAAGAAGACCTTTTCCGACATGAAAA CAACCGAAGTGCAAGTCAGCGATTACGAAGAAGACGATGAGCTCTGA
AA sequence Show only first row Show all	>Lus10035730 pacid=23147350 polypeptide=Lus10035730 locus=Lus10035730.g ID=Lus10035730.BGIv1.0 annot-version=v1.0 MSTKSAIFILFCCSCLLLNLVITAHEQDQPKSAPGTGAGAAAPPTYFDRIKAVASWVQTRFFPPATDKMMTGVKEEDEEKGGGGGGRVKEAVAKSIEKGK ETLEGTAKSAARMATQTAHDAKEKVKKTFSDMKTTEVQVSDYEEDDEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16850			unknown protein		Lus10035730 [exp]	0	1
AT5G19290			alpha/beta-Hydrolases superfam...		Lus10036530 [exp]	3.5	0.7735
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10014717 [exp]	6.6	0.7956
AT4G34340		TAF8	TBP-associated factor 8 (.1)		Lus10013818 [exp]	17.8	0.7623
AT4G27990		ATYLMG1-2	YGGT family protein (.1)		Lus10009586 [exp]	23.0	0.7770
AT3G53900		UPP, PYRR	PYRIMIDINE R, uracil phosphori...		Lus10024350 [exp]	24.0	0.7685
AT4G14890		FdC2	ferredoxin C 2, 2Fe-2S ferredo...		Lus10010557 [exp]	24.5	0.7852
AT2G33610		CHB2, ATSWI3B	CHROMATIN REMODELING COMPLEX S...		Lus10025165 [exp]	27.9	0.7588
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10014326 [exp]	28.1	0.7425
AT2G16030			S-adenosyl-L-methionine-depend...		Lus10018506 [exp]	28.6	0.7534
AT3G29575		AFP3	ABI five binding protein 3 (.1...		Lus10022764 [exp]	29.1	0.6910

Compare expression of checked genes

Lus10035730 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.