Plant FIBer expression Database

Lus10035731 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G27870 115 / 6e-27 Vacuolar iron transporter (VIT) family protein (.1)
AT5G24290 110 / 1e-25 Vacuolar iron transporter (VIT) family protein (.1), Vacuolar iron transporter (VIT) family protein (.2)
AT4G27860 95 / 2e-20 vacuolar iron transporter (VIT) family protein (.1), vacuolar iron transporter (VIT) family protein (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037315
[exp]
817 / 0 AT4G27870 135 / 2e-33 Vacuolar iron transporter (VIT) family protein (.1)
Lus10022771
[exp]
108 / 1e-24 AT4G27870 155 / 4e-41 Vacuolar iron transporter (VIT) family protein (.1)
Lus10011838
[exp]
107 / 3e-24 AT4G27870 161 / 9e-42 Vacuolar iron transporter (VIT) family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G004000
[exp]
166 / 2e-43 AT4G27870 126 / 1e-29 Vacuolar iron transporter (VIT) family protein (.1)
Potri.001G127900
[exp]
122 / 3e-29 AT4G27870 182 / 2e-49 Vacuolar iron transporter (VIT) family protein (.1)
PFAM info
Representative CDS sequence
>Lus10035731 pacid=23147454 polypeptide=Lus10035731 locus=Lus10035731.g ID=Lus10035731.BGIv1.0 annot-version=v1.0
ATGGGGGAAGTCCAGTACCAGTTGATGACCGCGGATCCTCCTGTTGTTACTCCTGCAATGGACGATGATTCAGAATTGGCGACACTCAAGCTTCTGGGAC
AGAGCAGTCTGAGACCTACGGTTCCAGCTTATCATCAGAACGGAAGCTGCTGCGTCTACGGCGGTGCGCCCGTTACTGTAAGTTTCCACGGTCCTGATTC
TTCAAAAGTTCCAACTCCGGAAAACAACGCTGCCGTTGAAGAGAGCGCTGCTGATACATTGGACTGTAGCGTTTACTTGTACCGACGCCGTCGTACGTAC
CTACTTATTTCCTCCGTCAATTCTTTCTTCCTAGGGTTTGTTGCAACCTTCAATTTTGTTGCTAAATGTGGATGCCGTTATTTATCAAGAAGTAATCCGT
GTAACTTGTTTTTTAAACGTAAAGGGAAATGGAAGTGCCGTCACTGCAACTGGACTGACTATTCGAATTATGGCTCTGCTAGTCGTCGGAGTTGGAAGTG
CCGCCATTGCAATTGGAACTCCTCCAACCCAAGCCGGCTGGTTAATAATGAAATCACAGGTACTGAGTCAGTCGATGGAGGCAAAAATGGTTTTCAATTC
AAAGGGCTGAACCATCAAAATGGAAGGCTCTCTGTCTCAAGCCAAACATCTCCGAATGGCTCGTCGGATCAACAACCAACGGTGAGATGGAGTTACAGAA
ATGGAGGGCGGGACGCAATGGAACAGACGAAAGAGGGTGTTACACAATTAGGTGTGGAGTCTGTTATAGAGAAGCTTGAACTGTATTGTCCTGACTGCAG
TTCTTGCATTACGAAACGGGTTATCTTGGATACAAGGAAACAAAATGCTCCAAACGAACACCCCAAACCGGAGGAAGTAGAAACCAAGTCCGAGGCTGCT
GCAAATCGTCCCAAGTCCAATGTTGAATCCAGCCATCCACCCCTTGACCAAGACAAAGACATTGTTGGTGGTTTCCCGGACAGTAGTTTCAGACCAGCAG
TTAATGAGGGCGAGCCAGATTTGTTCAGATGCTTCTCATGCTTCAGGTTCTTCATTCCCCAAGAACTACAAGTTGATGATCCAGTACCGGCTACATCGAC
TGTGCCACTGCTAGAACCAGCAACTGAAGGCCTGGTACAGGCTCCAAGAGTAACACTACTAGGAAATCAGACGCATATGGCTGAACAGAGAGGTGGAAGT
GGCGTTGGTGAGAGCTACAAGTGGGAAATTTTGAGAAGTGTAGTCTTTGGCGGGTTGATCGAATCAATTACAAGTCTTGGTGTCGTATCTTCCGCAGCAG
GCGCTGGTGCCGGAACTTATCTGAGACATGATTACTCCAGGAATGAACAAGAGGAAGACCGCTACCAGAAAACACTGGGCAGGAGGGAGAATTTGGCTCT
ACATTTCAGTGCAGCAATACTATCGTTTCTGGTATGCGGGTTGCTGCCTACTGTCACATATGGGTTCACATTTCAAACGGAAAACGGCAATATTAACAAA
GAAGAGAAGCTAATAGCAGCGGGAGGTGTTTCTCTAGTGTGCATCATTCTACTGGCAATAGGAAAAGCTCACATTCAAAAGAAGCAGCAGCAACTTAAAG
GAGGCTACACAGGAACTGTAATTTACTTCTTCAGCATCTGGATGGCTACATCAGGTACCTGCTACCTAGTTGGAGATCTATTTAAGAAACTAATCATCCC
CACGCCCATGTAA
AA sequence
>Lus10035731 pacid=23147454 polypeptide=Lus10035731 locus=Lus10035731.g ID=Lus10035731.BGIv1.0 annot-version=v1.0
MGEVQYQLMTADPPVVTPAMDDDSELATLKLLGQSSLRPTVPAYHQNGSCCVYGGAPVTVSFHGPDSSKVPTPENNAAVEESAADTLDCSVYLYRRRRTY
LLISSVNSFFLGFVATFNFVAKCGCRYLSRSNPCNLFFKRKGKWKCRHCNWTDYSNYGSASRRSWKCRHCNWNSSNPSRLVNNEITGTESVDGGKNGFQF
KGLNHQNGRLSVSSQTSPNGSSDQQPTVRWSYRNGGRDAMEQTKEGVTQLGVESVIEKLELYCPDCSSCITKRVILDTRKQNAPNEHPKPEEVETKSEAA
ANRPKSNVESSHPPLDQDKDIVGGFPDSSFRPAVNEGEPDLFRCFSCFRFFIPQELQVDDPVPATSTVPLLEPATEGLVQAPRVTLLGNQTHMAEQRGGS
GVGESYKWEILRSVVFGGLIESITSLGVVSSAAGAGAGTYLRHDYSRNEQEEDRYQKTLGRRENLALHFSAAILSFLVCGLLPTVTYGFTFQTENGNINK
EEKLIAAGGVSLVCIILLAIGKAHIQKKQQQLKGGYTGTVIYFFSIWMATSGTCYLVGDLFKKLIIPTPM

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G27870 Vacuolar iron transporter (VIT... Lus10035731
[exp]
0 1
AT4G31820 MAB4, ENP, NPY1 NAKED PINS IN YUC MUTANTS 1, M... Lus10042414
[exp]
3.7 0.8010
AT1G53590 NTMCTYPE6.1 ,NT... Calcium-dependent lipid-bindin... Lus10026192
[exp]
4.5 0.8241
AT5G04820 OFP ATOFP13, OFP13 ARABIDOPSIS THALIANA OVATE FAM... Lus10016979
[exp]
10.7 0.7627
AT4G14305 Peroxisomal membrane 22 kDa (M... Lus10011798
[exp]
15.7 0.8329
AT3G24570 Peroxisomal membrane 22 kDa (M... Lus10023648
[exp]
17.7 0.8043
AT4G18550 AtDSEL Arabidopsis thaliana DAD1-like... Lus10013935
[exp]
19.5 0.8293
AT1G49430 LRD2, LACS2 LATERAL ROOT DEVELOPMENT 2, lo... Lus10023832
[exp]
26.8 0.7512
AT3G62390 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 ... Lus10017671
[exp]
29.8 0.7411
AT1G51130 Nse4, component of Smc5/6 DNA ... Lus10042459
[exp]
30.6 0.7865
AT5G51170 unknown protein Lus10035151
[exp]
33.9 0.7836

Lus10035731 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.