Plant FIBer expression Database

Lus10035732 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G78780 249 / 2e-85 pathogenesis-related family protein (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037316
[exp]
292 / 4e-101 AT1G78780 337 / 9e-118 pathogenesis-related family protein (.1.2.3.4)
Lus10039018
[exp]
182 / 6e-58 AT1G78780 301 / 6e-104 pathogenesis-related family protein (.1.2.3.4)
Lus10027315
[exp]
163 / 9e-52 AT1G78780 171 / 3e-55 pathogenesis-related family protein (.1.2.3.4)
Lus10018919
[exp]
154 / 4e-47 AT1G78780 239 / 1e-79 pathogenesis-related family protein (.1.2.3.4)
Lus10029763
[exp]
139 / 3e-41 AT1G78780 228 / 3e-75 pathogenesis-related family protein (.1.2.3.4)
Lus10042792
[exp]
116 / 1e-33 AT1G78780 115 / 1e-33 pathogenesis-related family protein (.1.2.3.4)
Lus10028620
[exp]
59 / 4e-12 AT1G78780 67 / 1e-15 pathogenesis-related family protein (.1.2.3.4)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G108900
[exp]
247 / 1e-83 AT1G78780 365 / 4e-129 pathogenesis-related family protein (.1.2.3.4)
Potri.001G389800
[exp]
238 / 5e-80 AT1G78780 361 / 9e-128 pathogenesis-related family protein (.1.2.3.4)
Potri.001G389400
[exp]
234 / 1e-78 AT1G78780 352 / 4e-124 pathogenesis-related family protein (.1.2.3.4)
Potri.005G188400
[exp]
159 / 5e-49 AT1G78780 249 / 1e-83 pathogenesis-related family protein (.1.2.3.4)
Potri.005G188300
[exp]
158 / 1e-48 AT1G78780 251 / 2e-84 pathogenesis-related family protein (.1.2.3.4)
PFAM info
Representative CDS sequence
>Lus10035732 pacid=23147502 polypeptide=Lus10035732 locus=Lus10035732.g ID=Lus10035732.BGIv1.0 annot-version=v1.0
ATGGGAGATGGAGCTCTCTCACAAAACTCGCTTGCTCGACTTCCGCACCATCAATCCTCACAAGTTCCAACTCATCGGAGGGAAGGGCTGAGTGGGGAGG
AGACGCTAAGACAAGGGAGCTACAACGCACTGCTGAAGAACACTCTGCCCGAGAAGTTCCGGTACTACAAAACAGAAGAAGAGAGTTTCGAGACGTCCCA
CGACGCATTTCGATCCGCCTTTCCTCGAGGGTTTGCGTGGGAGGTGATCAGTGTCTATTCTGGTCCTCCGGTGATAACCTACAAGTTCAGACACTGGGGC
TTCTTTGAAGGACCTTTCAAAGGCCATGCTCCCACTGGGGAGATGGTTCAGTTCTATGGAATTGGGGTCATGAAGGTTGATGAATCAATGAGGGCAGAAG
AAGTGGAGATCTACTATGACCCTGCAGAACTGTTTGGAGGCTTACTCAAAGGAACACCAGTTTCCAAAATGCAAACACAAGATCGGGACGACCAAAACTC
CGATGAAGCTCTCGCTCAATCTTGTCCATTTTCCAACCATCTTTCTTCTTCTTCATGTTAG
AA sequence
>Lus10035732 pacid=23147502 polypeptide=Lus10035732 locus=Lus10035732.g ID=Lus10035732.BGIv1.0 annot-version=v1.0
MGDGALSQNSLARLPHHQSSQVPTHRREGLSGEETLRQGSYNALLKNTLPEKFRYYKTEEESFETSHDAFRSAFPRGFAWEVISVYSGPPVITYKFRHWG
FFEGPFKGHAPTGEMVQFYGIGVMKVDESMRAEEVEIYYDPAELFGGLLKGTPVSKMQTQDRDDQNSDEALAQSCPFSNHLSSSSC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G78780 pathogenesis-related family pr... Lus10035732
[exp]
0 1
AT1G10520 AtPol{lambda} DNA polymerase {lambda}, DNA p... Lus10030656
[exp]
21.1 0.7710
Lus10003863
[exp]
69.3 0.7297
AT2G34040 Apoptosis inhibitory protein 5... Lus10025428
[exp]
81.6 0.7090
AT3G52320 F-box and associated interacti... Lus10038541
[exp]
98.6 0.7183
AT3G27970 Exonuclease family protein (.1... Lus10022230
[exp]
106.5 0.6908
AT2G41510 ATCKX1, CKX1 cytokinin oxidase/dehydrogenas... Lus10035433
[exp]
127.5 0.7220
AT1G74240 Mitochondrial substrate carrie... Lus10017849
[exp]
158.2 0.6995
AT5G06130 chaperone protein dnaJ-related... Lus10016993
[exp]
158.5 0.6931
AT5G50310 Galactose oxidase/kelch repeat... Lus10040895
[exp]
221.8 0.6929
AT4G27300 S-locus lectin protein kinase ... Lus10014000
[exp]
236.8 0.6877

Lus10035732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.