Plant FIBer expression Database

Lus10035733 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G16840 127 / 1e-37 unknown protein
AT1G78890 114 / 2e-32 unknown protein
AT2G19180 83 / 3e-20 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037317
[exp]
271 / 2e-94 AT1G16840 133 / 4e-40 unknown protein
Lus10034821
[exp]
177 / 2e-57 AT1G16840 140 / 2e-43 unknown protein
Lus10033369
[exp]
158 / 3e-50 AT1G16840 119 / 3e-35 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G252800
[exp]
162 / 1e-50 AT1G16840 146 / 8e-45 unknown protein
Potri.008G005900
[exp]
160 / 1e-50 AT1G16840 142 / 8e-44 unknown protein
Potri.018G142900
[exp]
79 / 4e-18 AT2G19180 80 / 3e-18 unknown protein
PFAM info
Representative CDS sequence
>Lus10035733 pacid=23147411 polypeptide=Lus10035733 locus=Lus10035733.g ID=Lus10035733.BGIv1.0 annot-version=v1.0
ATGGCGCGCTCCCTCTTCTCCTCCTCCTCCCGAGCTTACCTAAACCTTGCTGCACCAACCTCCACTTCTTCCTACTCCGCCTCCTTCCGCTGCCTGGCCT
TCCGCTCCAACTCCAACCTTCCAAACAATCCCGTCGACCCCACCGATGAACCCTCCACCGACCCTCTCATCAGAAAGCTCGAGGACGCCATCCACCGTAT
CATCGTCCGCCGCGCCGCCCCTGATTGGCTACCTTTCGTTCCTGGCTCCTCCTATTGGGTCCCTTCCCCTAGATCTAACGCTGGTTCCTTCGGTATTGCC
CACCTCGCTGAGAGGCTCTCTAATCCCATGACCCACGAGGAGGCCCTCTCCGTCACCACAGTCAGAGGCTGGCCTTCCTCTGATTATTTCATTAAAGGTG
CCGGCCTAGACTCTGCAGACGTAGATAGAAATACAGAGGAATTGGAGAAGGATTCAACTTCAGTTGAAGTTGAAACTGAAGAGACGCCAAGTCATGCCCC
TAAGTCTAACACCGAGGAAGGATAA
AA sequence
>Lus10035733 pacid=23147411 polypeptide=Lus10035733 locus=Lus10035733.g ID=Lus10035733.BGIv1.0 annot-version=v1.0
MARSLFSSSSRAYLNLAAPTSTSSYSASFRCLAFRSNSNLPNNPVDPTDEPSTDPLIRKLEDAIHRIIVRRAAPDWLPFVPGSSYWVPSPRSNAGSFGIA
HLAERLSNPMTHEEALSVTTVRGWPSSDYFIKGAGLDSADVDRNTEELEKDSTSVEVETEETPSHAPKSNTEEG

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G16840 unknown protein Lus10035733
[exp]
0 1
AT1G16840 unknown protein Lus10037317
[exp]
1.4 0.8559
AT2G29700 ATPH1 pleckstrin homologue 1 (.1) Lus10040681
[exp]
1.7 0.8505
AT3G52105 unknown protein Lus10011321
[exp]
1.7 0.8882
AT4G16400 unknown protein Lus10016614
[exp]
5.9 0.8190
AT1G70330 "ENT1,AT", ENT1... equilibrative nucleotide trans... Lus10029162
[exp]
7.2 0.8385
AT2G20920 Protein of unknown function (D... Lus10025079
[exp]
8.5 0.8164
AT1G08315 ARM repeat superfamily protein... Lus10039500
[exp]
13.6 0.8333
AT3G09770 LOG2 LOSS OF GDU 2, RING/U-box supe... Lus10023182
[exp]
14.7 0.8297
AT5G20650 COPT5 copper transporter 5 (.1) Lus10022671
[exp]
15.9 0.8146
AT1G55365 unknown protein Lus10010316
[exp]
17.7 0.7514

Lus10035733 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.