Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47860 403 / 1e-138 CHL chloroplastic lipocalin (.1) AT5G58070 47 / 5e-06 ATTIL temperature-induced lipocalin (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037318 [exp] 553 / 0 AT3G47860 417 / 2e-146 chloroplastic lipocalin (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G420800 [exp] 427 / 2e-148 AT3G47860 428 / 8e-151 chloroplastic lipocalin (.1) Potri.005G047550 [exp] 44 / 9e-06 ND / Potri.018G110800 [exp] 44 / 7e-05 AT5G58070 310 / 3e-109 temperature-induced lipocalin (.1) Potri.013G035350 [exp] 39 / 0.0007 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0116 [flax] [poplar] Calycin PF08212 [flax] [poplar] Lipocalin_2 Lipocalin-like domain
Representative CDS sequence Show only first row Show all	>Lus10035734 pacid=23147668 polypeptide=Lus10035734 locus=Lus10035734.g ID=Lus10035734.BGIv1.0 annot-version=v1.0 ATGGTGGTATGTGTAATTCATCAATCACCTTCCTCTCTTCTTGGGCTGCAATCTTCCAGAACCAGCAGCAGCTCTTCTTCTTCTTCTCCTCCTCCTCCTC CTCCTCGTTCCTTCTTCCCCTTTCCCTGGCTTGCAGGGAAATTGAGCTTCAGCCTTGCCGCCTCGTCATTACTACTCCTCTCCCAACCTTACCAGGTTTT AGCAGCAGATGTGGGTCAATCTCAGCTTCACATGTACGAGATTGCTAATGCAGCAGTGGCAACCCTCCCGATTGAAGAGAGTTCTAATGGGATGTTGATG CAAATGAGAGGTATGACAGCAAAGAACTTTGACCCGGTTAGGTATTCTGGAAGGTGGTTTGAGGTAGCTTCCCTTAAACGTGGATTTGCTGGACAAGGTC AAGAAGATTGCCACTGCACTCAGGGTGTTTATACTTTTGATATGGAAGCGCCAGCAATCCAAGTGGACACATTCTGTGTACATGGAGGCCCTGATGGGTA CATTACAGGTATAAGAGGGAGAGTACAGTGCGTAGCAGACCAAGATCTGGAGAAAAACGAGACCGATCTTGAGAAACTGGAGATGATCAGAGAGAAATGC TACCTTCGTTTCCCAACACTTCCTTTCATCCCCAAGGAGCCTTATGATGTCATCGCCACTGATTATGACAACTTTGCTCTTGTTTCTGGTGCCAAAGACA AAAGCTTTGTTCAGATATACTCAAGGACGCCTAATCCAGGAGAGGCATTCATAGACAAGTACAAGGCGTACCTGGGGGATTTCGGGTATGATCCAACCAA AATCAACAACACACCACAGGACTGTGAAGTGAAGTCAACAGGTCAATTGTCTGCAATGATGGCGATGCCAGGGATGCAACAGGCTCTCACTAACCAGTTC CCTGATCTGGCCTTAAACTCCTCCATTGAGTTTAACCCTTTTACGAGTGTGTTTGACACATTGAAGAAGCTCCTTGAGCTCTACTTCAACGCGTACACGG TATTCTTTAGTAAAAGGCGAAAGAATAGTTCGCTATGTACTCACTGCGAGGCTGCGTGGGAAACTGGAAGCGTGCTTGAGTTCAATTTATATGGTTTATC GTCAACAAAGGACGAGTTCCTTCTACTATACCAGCAATGTGGTACGAGAGGGGCTCCTTTAACCAACAGCCTGGGACGTCAATACTCAATACATAGAAAC AACAGCCAATTTGGAAATACGGGACAGCTGTTCCTCCCTTTTCAGCAACAGCCAGGTAACACGAGCATTCTCAAAATCGAAGTCCACCCGTTTTTCCAAC GAATCAACAAACCTATCGTCACAGCCCGGACGCCCCAAGCTCCGAACCTAATCATCACATCCCAGACTACACTTCGTTGTGAAAGCTGCTGTGCTTATAA GAGGATGTTGGAAGGGAGACTATGGCAAAGTCACATTTCTGGAATGATTCAAGTTTAA
AA sequence Show only first row Show all	>Lus10035734 pacid=23147668 polypeptide=Lus10035734 locus=Lus10035734.g ID=Lus10035734.BGIv1.0 annot-version=v1.0 MVVCVIHQSPSSLLGLQSSRTSSSSSSSSPPPPPPRSFFPFPWLAGKLSFSLAASSLLLLSQPYQVLAADVGQSQLHMYEIANAAVATLPIEESSNGMLM QMRGMTAKNFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDMEAPAIQVDTFCVHGGPDGYITGIRGRVQCVADQDLEKNETDLEKLEMIREKC YLRFPTLPFIPKEPYDVIATDYDNFALVSGAKDKSFVQIYSRTPNPGEAFIDKYKAYLGDFGYDPTKINNTPQDCEVKSTGQLSAMMAMPGMQQALTNQF PDLALNSSIEFNPFTSVFDTLKKLLELYFNAYTVFFSKRRKNSSLCTHCEAAWETGSVLEFNLYGLSSTKDEFLLLYQQCGTRGAPLTNSLGRQYSIHRN NSQFGNTGQLFLPFQQQPGNTSILKIEVHPFFQRINKPIVTARTPQAPNLIITSQTTLRCESCCAYKRMLEGRLWQSHISGMIQV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47860		CHL	chloroplastic lipocalin (.1)		Lus10035734 [exp]	0	1
AT1G30910			Molybdenum cofactor sulfurase ...		Lus10007754 [exp]	1.4	0.8663
AT3G17020			Adenine nucleotide alpha hydro...		Lus10037761 [exp]	3.2	0.8703
AT5G25170			PPPDE putative thiol peptidase...		Lus10005341 [exp]	10.0	0.7815
AT2G13290			beta-1,4-N-acetylglucosaminylt...		Lus10038093 [exp]	12.2	0.8502
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Lus10023605 [exp]	14.7	0.8527
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10015907 [exp]	15.0	0.8197
AT1G21790			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10025673 [exp]	15.6	0.8399
AT1G16080			unknown protein		Lus10024094 [exp]	15.8	0.8619
AT2G19770		PRF5	profilin 5 (.1)		Lus10037591 [exp]	19.9	0.8288
AT5G51110			Transcriptional coactivator/pt...		Lus10014182 [exp]	20.0	0.8513

Compare expression of checked genes

Lus10035734 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.