Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11690 504 / 5e-174 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G39710 258 / 5e-77 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 245 / 3e-73 RPF2 rna processing factor 2 (.1) AT1G62930 237 / 4e-70 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 232 / 4e-68 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01110 233 / 1e-67 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12300 227 / 2e-66 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 225 / 2e-65 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 225 / 5e-65 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 223 / 5e-65 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037319 [exp] 1021 / 0 AT4G11690 534 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10027914 [exp] 266 / 6e-80 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 268 / 6e-79 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 259 / 4e-77 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013841 [exp] 247 / 9e-72 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012037 [exp] 241 / 2e-71 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 241 / 1e-69 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 234 / 5e-68 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 234 / 2e-67 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G131600 [exp] 649 / 0 AT4G11690 632 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.004G147700 [exp] 256 / 7e-77 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050400 [exp] 246 / 1e-73 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G038400 [exp] 243 / 1e-72 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G271200 [exp] 238 / 9e-71 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050240 [exp] 236 / 9e-70 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.009G105600 [exp] 238 / 1e-69 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G069600 [exp] 238 / 1e-69 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050180 [exp] 235 / 1e-69 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G271400 [exp] 235 / 1e-69 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10035735 pacid=23147359 polypeptide=Lus10035735 locus=Lus10035735.g ID=Lus10035735.BGIv1.0 annot-version=v1.0 ATGCAGCAAACCCATTACCCGGCGATGTCAATACTCCCCAAGATAGTGAAAATCCCGCCTTCCGTGACTCTTTCAGTCTTGGACTCCACTATTCTTCATG GCGTCCATCACAGCACCTACTCCATCTCCTTCATCTTCCAACACCTTCTCCATGCAAACATGCTATCCGCTGCTCAGACGCTTCTTCAGCGAATACTCTC CAATCGAATCTCTTCCCCTTCCTTCTCCGTTTCCTCCCTTCTCCAAGGTTTAACACAATCCAATTCAATTACTGCCCGTGTATATGAATCAATCGTCAAT GCTCATGTTCATTTGCAGTTAATAGACCAAGCTTTGTTCTATTTTCATCAAATGCTTCAAAGGGGTCTTGCTCCTCCTGGAGCCCTAACATTCAATAACC TGTTGAGCTGTCTTGTTAAGTCTGGCTGCTATGAAAAATCCTGGAACTTGTTCCAAGCCGTAAAGGGGAAGGTGAAAATGGACGTTTATAGTTTTGGAAT GATGGTGAAAGGTTGTTGCGAGTCTGGTGATTTGGATAGAGGTTTTGAGGTTCTGCTTCAGTTGGAGGAGGATCAGGAGATGGATCTCCCTTCTCCAAAT GTTGTTATATACACGACTTTGATTGATGGTTGCTGCAAGAAGGGCGATCTCGAAAGGGCGAGATTGCTCTTCAGTAAAATTGAAGAGCTAGCTAATGAGT ATACTTACACTGTCTTGATTAGTGGATTCTTTAAGAAAGGGATGAGAAGAGATGGGTTCAAGTTATATGAGAAGATGCAGCTGCGTGGGATAACTCCCAA TCTTTATACTTACAATTGTGTGATTAATGAGTATTGCAGTGAAGGGAAGATAGACAAAGCTTCTTCTCTGTTTGATGAGATGTGTAATAAGAGAGGTATT GTCCCTAATGTGGTTTCTTACAATATTCTAATTGGTGGAATGTGTAAAAGTAGGAGACTTTGGGAAGCAGAGAAGATGTTGAACAGAATGAGAAGAGAAG GTGTTGTTCCGAATTTAATCACATATAACAATATGATAGGTGGATCTTGCAGCATCGGATTGTTCGACAAGGCTTTGTTTTGGTTAGAGGAAATGAAGTC GAATGCGATAATGCCGTCTTTAGTTACTTACAATGTTCTCATTCAGGGGTATTGTGATGCTGGTAGTCTAAGCAGTGTGACTGATTTGGTTAGGGAGATG GAAGCAAGAGGTTTTGCTCCTTCTGAAGTGACCTACACAATTTTAATTAATGGCTACGTTAAGTTAGGGGATATGGAAAAAGCTTATCAACTTGTTTCCT CTATGAAGACTGCTGGTTTAGTACCTGATGCTTACACTTACGGAGTGTTGATAAATGGATTCTGCAAGAAGGGAAACATGAAAGAAGCTGCAAAGTTGTT TAGATCCATGGGAGAAATGCGTCTGGCCGAGCCTAGTGATGTTATATACAACACGATGATCGGGGGATACTGCAACGAAGGTAGCTCGTATCGGGCCTTG AGGTTGGTTGAGGAAATGGAGAGTAAGGGATTTGTTCCAAATGTGGCTAGCTATAGTTCGACTGTTGGAGTCTTGTGCAAGGACGGGAAGTGGCAACACG CGGAGGTGTTATTGAATAGTATGATTAGGAAAGGATTGAAACCTACCGTCTCCATGTATAATAAGATGCATGAAGCTAGATGTGCATGA
AA sequence Show only first row Show all	>Lus10035735 pacid=23147359 polypeptide=Lus10035735 locus=Lus10035735.g ID=Lus10035735.BGIv1.0 annot-version=v1.0 MQQTHYPAMSILPKIVKIPPSVTLSVLDSTILHGVHHSTYSISFIFQHLLHANMLSAAQTLLQRILSNRISSPSFSVSSLLQGLTQSNSITARVYESIVN AHVHLQLIDQALFYFHQMLQRGLAPPGALTFNNLLSCLVKSGCYEKSWNLFQAVKGKVKMDVYSFGMMVKGCCESGDLDRGFEVLLQLEEDQEMDLPSPN VVIYTTLIDGCCKKGDLERARLLFSKIEELANEYTYTVLISGFFKKGMRRDGFKLYEKMQLRGITPNLYTYNCVINEYCSEGKIDKASSLFDEMCNKRGI VPNVVSYNILIGGMCKSRRLWEAEKMLNRMRREGVVPNLITYNNMIGGSCSIGLFDKALFWLEEMKSNAIMPSLVTYNVLIQGYCDAGSLSSVTDLVREM EARGFAPSEVTYTILINGYVKLGDMEKAYQLVSSMKTAGLVPDAYTYGVLINGFCKKGNMKEAAKLFRSMGEMRLAEPSDVIYNTMIGGYCNEGSSYRAL RLVEEMESKGFVPNVASYSSTVGVLCKDGKWQHAEVLLNSMIRKGLKPTVSMYNKMHEARCA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11690			Pentatricopeptide repeat (PPR-...		Lus10035735 [exp]	0	1
AT3G63370		OTP86	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10014707 [exp]	25.6	0.8104
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10020918 [exp]	60.6	0.7883
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Lus10012652 [exp]	64.7	0.7952
AT5G03250			Phototropic-responsive NPH3 fa...		Lus10023523 [exp]	77.0	0.7735
AT4G14170			Pentatricopeptide repeat (PPR)...		Lus10036095 [exp]	78.2	0.7789
AT1G07740			Tetratricopeptide repeat (TPR)...		Lus10005877 [exp]	83.4	0.7698
AT1G14430			glyoxal oxidase-related protei...		Lus10030798 [exp]	90.5	0.7790
AT1G55370		NDF5	NDH-dependent cyclic electron ...		Lus10020267 [exp]	105.0	0.7777
AT1G02065	SBP	SPL8	squamosa promoter binding prot...		Lus10042882 [exp]	105.2	0.7673
AT5G20060			alpha/beta-Hydrolases superfam...		Lus10019438 [exp]	125.8	0.7610

Compare expression of checked genes

Lus10035735 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.