Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49950 614 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT1G34340 558 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT3G50790 190 / 2e-54 esterase/lipase/thioesterase family protein (.1) AT2G03140 99 / 3e-21 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037322 [exp] 1021 / 0 AT5G49950 632 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10035744 [exp] 984 / 0 AT5G49950 631 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037325 [exp] 944 / 0 AT5G49950 627 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10036590 [exp] 840 / 0 AT5G49950 638 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10035807 [exp] 361 / 2e-121 AT5G49950 283 / 6e-92 alpha/beta-Hydrolases superfamily protein (.1) Lus10035741 [exp] 232 / 3e-73 AT5G49950 144 / 2e-40 alpha/beta-Hydrolases superfamily protein (.1) Lus10001673 [exp] 196 / 2e-56 AT3G50790 536 / 0.0 esterase/lipase/thioesterase family protein (.1) Lus10017332 [exp] 158 / 1e-42 AT3G50790 431 / 9e-150 esterase/lipase/thioesterase family protein (.1) Lus10034894 [exp] 103 / 8e-23 AT2G03140 697 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G223100 [exp] 645 / 0 AT5G49950 648 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G115000 [exp] 521 / 0 AT1G34340 629 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G146500 [exp] 201 / 2e-58 AT3G50790 512 / 0.0 esterase/lipase/thioesterase family protein (.1) Potri.006G136900 [exp] 111 / 3e-25 AT2G03140 1356 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10035739 pacid=23147614 polypeptide=Lus10035739 locus=Lus10035739.g ID=Lus10035739.BGIv1.0 annot-version=v1.0 ATGGATGGATGTGGAGCAGCTGAATTTGTTTCTGGTTCTCCGTACCATCTTCTTTTCAAAGCTCTGTCTCTAATCCCTCCCGTTCACTATGCCGCATTCA TCCTATCTCTTCTTCTGGTCTTCCTCTACAATTTCCTGGAGATTCATTTCTTCCGCAATTTCCTCACTGGCTTCAGCGGGAATCCGGTCAATCTCACTTA CAATGCTTCGTCAGAGCTCTACCACTCCATTGTTTCCAAGTGCCGAGTTCTCCACGGCAGGTATTTACCAACTCTATGGCTTTGTAGTCCACATCTACAA ACAGCATTCTTGACTTTCTTCGGTAATCCTCCTCGTTTCACCTATAAAAGGGTGCTATTCCGTACAAGTGATGGGGGGACAATTGCTTTGGACTGGCTCT TGCACTCTCATGTTAATGGCGACATTGCTGACAACTTGAATGAAACGGTCCCGCAAAAAACTGACAAAGCTCCTATTTTGATAGTTATTCCTGGCTTAAC AAGCGATTCTGATGCTTCTTACGCAAAGCACCTTGTATTCAAGATGGCAAAACAGGGTTGGAATGTTGTGGTAGCCAATCACCGTGGACTAGGAGGTGTA CAGATAACTTCTGACTGCTTCTACAATGCTGGGTGGACAGAAGACACGAGAAGAATTATTGAGCACATCCATCAGGAATATCTAGATACTCCTCTTTATG TGGTTGGGACTAGTATCGGTGCCAATATCCTGGTGAAGTATCTAGGGGAGGACTCAGTTAATGTTCCCATCTTAGGCGCTGTTGCTGTGTGTTCTCCTTG GGATCTGACGATAGGTGACAGGTTTATCAAACGAAGATTTGCTCAAAAACTTTATGACAGGGCACTCGGGGCTGGAATCGTAAGTTATGCTAAACTGCAT CAAACTATCATGTCTCGGCTTGTAGACTGGGATAGTATTACCAAGTCGCGTTCTCTCCGGGACTTCGATAACTGTGCTACTTGTTTTCTTGGGAAATTTG AGACAGTAGACACATATTACAGACGTTCTAGCTCTGTTAACCATGTGGGGAACGTAGCAGTGCCCCTTCTTTGCATAAGTGCGTTGGATGACCCTGTTTG TACAAGAGAAGCTATTCCATGGGATGAATGCAGGATGAATCCAAACATTGTCCTGGCTGCAACAGAGCATGGAGGCCACCTAGCTTATTATGAAGGACTT ACCGCTAGTAGCATGTGGTGGGTGAGAGCTGCTAGTGAATACCTCGAGGTGATGCGGTTTAGCCCGTTGAAGGACAACCCAAAAAGGGTGGAACCATCTA GCACAACCAATCCATTGGAATCGAAAATCGACCAGGGGCCTTTCATTAATGTAGCGGATGATGGAACTGTAGCTGCAGTTGCCGACATCCACAAAGAGGA TGCAGGAGCAGCAGATGACACTAGCAACGTTTACAATACTGGCAAGGAGGTCAATGAGGAAGAAGACAACAGCAAGGATGTGGCGACGTCCAAGAAAATG GATCTCGAGTCTCCTTTTGATCACAAACTCAGCGATCTTATTGATCCCATAAAGAGACAAATGACCAAGCTCAGAAGGCATAGCAGAACGTCCATCTGGC TTCTTGCTTACATAGCAATCGTAACAACTTGGCCCGTGTTGGGTTCAGGGCTTCTTTTCTACCTCAAGAGAAAGTCACGCAGAAGCTTCAGGCGACCAGC AGTTGTGCCTAGCAGCAGATAG
AA sequence Show only first row Show all	>Lus10035739 pacid=23147614 polypeptide=Lus10035739 locus=Lus10035739.g ID=Lus10035739.BGIv1.0 annot-version=v1.0 MDGCGAAEFVSGSPYHLLFKALSLIPPVHYAAFILSLLLVFLYNFLEIHFFRNFLTGFSGNPVNLTYNASSELYHSIVSKCRVLHGRYLPTLWLCSPHLQ TAFLTFFGNPPRFTYKRVLFRTSDGGTIALDWLLHSHVNGDIADNLNETVPQKTDKAPILIVIPGLTSDSDASYAKHLVFKMAKQGWNVVVANHRGLGGV QITSDCFYNAGWTEDTRRIIEHIHQEYLDTPLYVVGTSIGANILVKYLGEDSVNVPILGAVAVCSPWDLTIGDRFIKRRFAQKLYDRALGAGIVSYAKLH QTIMSRLVDWDSITKSRSLRDFDNCATCFLGKFETVDTYYRRSSSVNHVGNVAVPLLCISALDDPVCTREAIPWDECRMNPNIVLAATEHGGHLAYYEGL TASSMWWVRAASEYLEVMRFSPLKDNPKRVEPSSTTNPLESKIDQGPFINVADDGTVAAVADIHKEDAGAADDTSNVYNTGKEVNEEEDNSKDVATSKKM DLESPFDHKLSDLIDPIKRQMTKLRRHSRTSIWLLAYIAIVTTWPVLGSGLLFYLKRKSRRSFRRPAVVPSSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10035739 [exp]	0	1
AT4G21770			Pseudouridine synthase family ...		Lus10018352 [exp]	7.9	0.8762
AT1G30680			toprim domain-containing prote...		Lus10023380 [exp]	8.8	0.8995
AT5G44600			S-adenosyl-L-methionine-depend...		Lus10001217 [exp]	16.4	0.8841
AT1G30520		AAE14	acyl-activating enzyme 14 (.1)		Lus10036027 [exp]	22.4	0.8804
AT4G32320		APX6	ascorbate peroxidase 6 (.1)		Lus10002916 [exp]	24.6	0.8826
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015110 [exp]	26.4	0.8804
AT5G51100		FSD2	Fe superoxide dismutase 2 (.1)		Lus10026881 [exp]	28.2	0.8648
AT1G74850		PDE343, PTAC2	PIGMENT DEFECTIVE 343, plastid...		Lus10036651 [exp]	33.2	0.8761
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10024297 [exp]	33.4	0.8775
AT3G13120			Ribosomal protein S10p/S20e fa...		Lus10016604 [exp]	36.2	0.8776

Compare expression of checked genes

Lus10035739 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.