Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10530 428 / 2e-146 Transducin/WD40 repeat-like superfamily protein (.1) AT2G33340 49 / 3e-06 MAC3B MOS4-associated complex 3B (.1.2.3) AT1G11160 47 / 3e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 47 / 3e-05 TAF5 TBP-associated factor 5 (.1) AT2G16780 45 / 0.0001 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT1G61210 45 / 0.0001 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G42660 45 / 0.0001 transducin family protein / WD-40 repeat family protein (.1) AT1G04510 44 / 0.0002 MAC3A MOS4-associated complex 3A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037324 [exp] 599 / 0 AT3G10530 718 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032289 [exp] 555 / 0 AT3G10530 443 / 4e-152 Transducin/WD40 repeat-like superfamily protein (.1) Lus10024656 [exp] 498 / 9e-177 AT3G10530 483 / 1e-169 Transducin/WD40 repeat-like superfamily protein (.1) Lus10035742 [exp] 147 / 3e-42 AT3G10530 214 / 2e-67 Transducin/WD40 repeat-like superfamily protein (.1) Lus10024447 [exp] 51 / 1e-06 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10004167 [exp] 48 / 1e-05 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10034648 [exp] 47 / 3e-05 AT3G42660 1083 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10021720 [exp] 47 / 3e-05 AT3G42660 1069 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10014477 [exp] 46 / 5e-05 AT2G33340 784 / 0.0 MOS4-associated complex 3B (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G232500 [exp] 479 / 2e-166 AT3G10530 727 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G029100 [exp] 454 / 5e-157 AT3G10530 732 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G171600 [exp] 53 / 2e-07 AT2G33340 830 / 0.0 MOS4-associated complex 3B (.1.2.3) Potri.010G066000 [exp] 50 / 2e-06 AT2G33340 819 / 0.0 MOS4-associated complex 3B (.1.2.3) Potri.018G020200 [exp] 50 / 2e-06 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.012G065200 [exp] 50 / 2e-06 AT3G42660 1107 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.006G263400 [exp] 48 / 1e-05 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.010G255400 [exp] 45 / 6e-05 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF08149 [flax] [poplar] BING4CT BING4CT (NUC141) domain
Representative CDS sequence Show only first row Show all	>Lus10035740 pacid=23147397 polypeptide=Lus10035740 locus=Lus10035740.g ID=Lus10035740.BGIv1.0 annot-version=v1.0 ATGGCGGAGGAATTATCTGCAGAGTTCAATATGAATCTGCAGAAGTACCTTAGAGGAGAGGCTCCTGATCTAGAGGCACTGAAAGATAAAAAGTTAAAAG GTCAGCAAATTGTTAGAGAAAAATTACATGAAAAGTCTGCAACTGTTGCTGCGAAGCATGAAAAGTGGCTTAAACCAAGTGAGGGAAGCTTTCTCGAGCC TGAAGGTATTGAGAAGACATGGAGGATTAAACAGAATGAGATTGCTCGTGAAGTAAATGTTAAAAGTTCAAGTAATCAGTATGATATAGTGTTGCCAGAT CTTGGTCCCTACACTCTGGATTTCACTGCCAGTGGTCGATACATTGCCCTTGCTGGACGCAAGGGGCATGTGGCTATTATAGACCTGATAAGTATGGACA AAATTAGAGAGATGCAGGTTAAAGAAACAGTGCGAGATGTTGCGTTTTTGCACAATGAGACCTTCTTTGCAGTTGCCCAGAAAAAGTACCCTTATATTTA TAACCGGGATGGAACGGAGCTTCATTGTTTAAAGGAACATGGGCCAGTGTCGCATCTACAGTTTCTTAAAAACCATTTCCTCTTAGCTTCATTAAGTACA TTTGGGCAACTTCGGTACCAGGATGTAACAACGGGTCAGATGATAGGTAACTTCCGTACCGGGATGGGACGTGCCGACGCGATGCAGGTCAACCCTTTCA ACGGCGTCCTAGCAGTAGGGCACTCTGGTGGTACAGTAACCATGTGGAAGCCCACGAGTGCTGCTCCTTTAGTCAAGATGCTCTGCCATCCTGGTCCAAT CTCTGCCCTAGCATTCCACCCGAATGGCCATCTCATGGCAACAGCCGGAAGGGAGAAGAAAAGAAAGATTTGGGAATGTTCCGGGGAGCCTAATTTTGAT TCAAGGGTTGCGAATCCGTACGAGACGAGTAAACAGAGAAGAGAGAAGGAGATCCATAATCTACTGGACAAGCTGCCACCAGAGACGATAATGTTGGATC CTTCGAAGATTGGTACATTGAGGACAAGCAGGAGGAAGGAAAAACCCACGAAGGAGATGGAAGAGGAGAAGGAGGCTGCGGTGGAGGCAGTGAAAGAGAT TGCGTTGAAGAAGAAGACGAAAGGTAGGAACAAGACGAGCAAGAGAGTGATGAAGAGAAAGGTGATGGTTGATAAAGCTAAGAAACCTTTCTTGGAGAAG CAAAAGCAGGAGAAGGAGGAAGGCAAAGTTAACGTTGATGATGGGAAGAAGAGGAAACACGGCGAGGAAACTCAACTGCCTGCTTCTCTCCAGAGATTCG TGCGTAAGAAGGCTGCTTAG
AA sequence Show only first row Show all	>Lus10035740 pacid=23147397 polypeptide=Lus10035740 locus=Lus10035740.g ID=Lus10035740.BGIv1.0 annot-version=v1.0 MAEELSAEFNMNLQKYLRGEAPDLEALKDKKLKGQQIVREKLHEKSATVAAKHEKWLKPSEGSFLEPEGIEKTWRIKQNEIAREVNVKSSSNQYDIVLPD LGPYTLDFTASGRYIALAGRKGHVAIIDLISMDKIREMQVKETVRDVAFLHNETFFAVAQKKYPYIYNRDGTELHCLKEHGPVSHLQFLKNHFLLASLST FGQLRYQDVTTGQMIGNFRTGMGRADAMQVNPFNGVLAVGHSGGTVTMWKPTSAAPLVKMLCHPGPISALAFHPNGHLMATAGREKKRKIWECSGEPNFD SRVANPYETSKQRREKEIHNLLDKLPPETIMLDPSKIGTLRTSRRKEKPTKEMEEEKEAAVEAVKEIALKKKTKGRNKTSKRVMKRKVMVDKAKKPFLEK QKQEKEEGKVNVDDGKKRKHGEETQLPASLQRFVRKKAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10530			Transducin/WD40 repeat-like su...		Lus10035740 [exp]	0	1
AT3G02860	C2H2ZnF		zinc ion binding (.1.2)		Lus10037693 [exp]	1.0	0.8835
AT1G20770			unknown protein		Lus10030736 [exp]	1.7	0.8716
AT5G59240			Ribosomal protein S8e family p...		Lus10016587 [exp]	2.8	0.8430
AT4G15850		ATRH1	RNA helicase 1 (.1)		Lus10028117 [exp]	3.2	0.8493
AT4G18100			Ribosomal protein L32e (.1)		Lus10012195 [exp]	4.0	0.8519
AT1G80750			Ribosomal protein L30/L7 famil...		Lus10019603 [exp]	4.7	0.8774
AT4G08310			unknown protein		Lus10028028 [exp]	6.0	0.8225
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10002702 [exp]	8.9	0.8207
AT4G32910			unknown protein		Lus10011625 [exp]	9.0	0.8417
AT3G49890			unknown protein		Lus10019282 [exp]	10.1	0.7898

Compare expression of checked genes

Lus10035740 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.