Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49950 120 / 6e-32 alpha/beta-Hydrolases superfamily protein (.1) AT1G34340 92 / 6e-22 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037325 [exp] 322 / 1e-108 AT5G49950 627 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10035744 [exp] 249 / 2e-80 AT5G49950 631 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10035739 [exp] 217 / 7e-68 AT5G49950 627 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037322 [exp] 214 / 6e-67 AT5G49950 632 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10036590 [exp] 194 / 2e-59 AT5G49950 638 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10035807 [exp] 149 / 7e-44 AT5G49950 283 / 6e-92 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G223100 [exp] 136 / 1e-37 AT5G49950 648 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G115000 [exp] 81 / 5e-18 AT1G34340 629 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035741 pacid=23147488 polypeptide=Lus10035741 locus=Lus10035741.g ID=Lus10035741.BGIv1.0 annot-version=v1.0 ATGAATCCAAACATTGTCCTGGCTGCAACAGAACATGGAGGCCACCTAGCTTATTATGAAGGACTTACCGCTAGTAACATGTGGTGGGTGAGAGCTGCTA GTGAATTCCTCGAGCTGATGCGGTCTAGCCCGTTAAAGGACAAACCAAAAAGGGTGGAATCATCTAGCACAACCAATCCACTGGAATCGGAAATCGACCA GGGGCCTTTCATCAACGCAGTGGATGACGGAACTGTAGCTGCAGTCGTCGACATCCACAAAGACGATGCAGCAGATGACGTGGACCATACTGGCAGGGAG GACAGTGAGGAAGAAGAAAGCAGCAAGGATGTGGAAACGCCCAAGAAAGTGGATCCTGGAAACAATCATGAGTCTCCTTCTGATAAAAAGCTGAGCGATC TGATTGATCCCGTAAAGAGACAAATAACTCAACTCAGACGGCATAGCAGAACGTCAATATGGTTTCTTGCTTACATAGCAATTGTAGCAACTTGGCCTGT GTTGGGGTTCTGGCCTTCTTTTCTACCTCAAGAGAAAGTCACGGAGAAGCTTCAGGCGACCAGCAGCTGTGCCTAG
AA sequence Show only first row Show all	>Lus10035741 pacid=23147488 polypeptide=Lus10035741 locus=Lus10035741.g ID=Lus10035741.BGIv1.0 annot-version=v1.0 MNPNIVLAATEHGGHLAYYEGLTASNMWWVRAASEFLELMRSSPLKDKPKRVESSSTTNPLESEIDQGPFINAVDDGTVAAVVDIHKDDAADDVDHTGRE DSEEEESSKDVETPKKVDPGNNHESPSDKKLSDLIDPVKRQITQLRRHSRTSIWFLAYIAIVATWPVLGFWPSFLPQEKVTEKLQATSSCA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10035741 [exp]	0	1
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10013219 [exp]	7.0	0.8364
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Lus10007568 [exp]	8.2	0.7295
AT5G26040		HDA2	histone deacetylase 2 (.1.2)		Lus10024990 [exp]	10.9	0.8145
AT3G03810		EDA30	embryo sac development arrest ...		Lus10013612 [exp]	12.6	0.7229
AT3G26880			Plant self-incompatibility pro...		Lus10025937 [exp]	12.7	0.8102
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Lus10011105 [exp]	13.2	0.7504
AT2G03620		AtMRS2-5, AtMGT...	magnesium transporter 3 (.1.2)		Lus10037081 [exp]	15.5	0.7907
AT1G73350			unknown protein		Lus10026363 [exp]	21.3	0.7912
AT3G14130			Aldolase-type TIM barrel famil...		Lus10013173 [exp]	30.6	0.7861
					Lus10013810 [exp]	32.6	0.7870

Compare expression of checked genes

Lus10035741 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.