Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10530 159 / 3e-46 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037324 [exp] 169 / 2e-50 AT3G10530 718 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10035740 [exp] 110 / 1e-28 AT3G10530 431 / 2e-147 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032289 [exp] 107 / 2e-27 AT3G10530 443 / 4e-152 Transducin/WD40 repeat-like superfamily protein (.1) Lus10024656 [exp] 72 / 5e-15 AT3G10530 483 / 1e-169 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G029100 [exp] 157 / 2e-45 AT3G10530 732 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G232500 [exp] 154 / 2e-44 AT3G10530 727 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08149 [flax] [poplar] BING4CT BING4CT (NUC141) domain
Representative CDS sequence Show only first row Show all	>Lus10035742 pacid=23147457 polypeptide=Lus10035742 locus=Lus10035742.g ID=Lus10035742.BGIv1.0 annot-version=v1.0 ATGGCGAAAGGATACCAGATAGGGAAAGTATCGTTTAGGCCCTACGAAGATGTTCTGGTTTTAGGACACTCGATGGGTTGGTCCTCTATTCTCATTCCAG GTTCCGGGGAGCCTAATTTTGATTCAAGGGTTGCGAATCCGTACGAGACGAGTAAACAGAGAAGAGAGAAGGAGATCCATAATCTACTGGACAAGCTGCC ACCAGAGACGATAATGTTGGATCCTTCGAAGATCGGTACATTGAGGACAAGCAGGAGGAAGGAGAAACCTACGAAGAAGGAAATGGAAGAGGAGAAAGAG GCTGCGGTGGAGGCAGTGAAAGAGATTGCGTTGAAGAAGAAGACGAAAGGTAGGAACAAGACGAGCAAGAGAGTGATGAAGAGAAAGGTGATGGTTGATA AAGCTAAGAAACAATTAAAATTGGAGAAGCAAAAGCAGGAGAAGGAGGAAGGCAAAGTTAACGTTGATGATGGGAAGAAGAGGAAACACGGCGAGGAAAC TGAACTTCCTGCTTCTCTCCAGAGATTCGTGCGTAAGAAGGCTGCTTAG
AA sequence Show only first row Show all	>Lus10035742 pacid=23147457 polypeptide=Lus10035742 locus=Lus10035742.g ID=Lus10035742.BGIv1.0 annot-version=v1.0 MAKGYQIGKVSFRPYEDVLVLGHSMGWSSILIPGSGEPNFDSRVANPYETSKQRREKEIHNLLDKLPPETIMLDPSKIGTLRTSRRKEKPTKKEMEEEKE AAVEAVKEIALKKKTKGRNKTSKRVMKRKVMVDKAKKQLKLEKQKQEKEEGKVNVDDGKKRKHGEETELPASLQRFVRKKAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10530			Transducin/WD40 repeat-like su...		Lus10035742 [exp]	0	1
AT5G15220			Ribosomal protein L27 family p...		Lus10007170 [exp]	1.4	0.9323
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Lus10032634 [exp]	3.2	0.9194
AT5G44200		ATCBP20, CBP20	CAP-binding protein 20 (.1.2)		Lus10033636 [exp]	3.5	0.8985
AT1G14620		XTR2, EXGT-A2, ...	decoy (.1.2)		Lus10030524 [exp]	4.5	0.8718
AT4G22000			unknown protein		Lus10008487 [exp]	5.5	0.9142
AT2G37970		SOUL-1	SOUL heme-binding family prote...		Lus10000106 [exp]	5.7	0.8839
AT5G22720			F-box/RNI-like superfamily pro...		Lus10024696 [exp]	6.5	0.8704
AT5G30490			unknown protein		Lus10037824 [exp]	7.3	0.8950
AT3G25120			Mitochondrial import inner mem...		Lus10008094 [exp]	7.9	0.8898
AT2G44860			Ribosomal protein L24e family ...		Lus10020552 [exp]	8.0	0.8910

Compare expression of checked genes

Lus10035742 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.