Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49950 624 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT1G34340 559 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT3G50790 205 / 2e-60 esterase/lipase/thioesterase family protein (.1) AT2G03140 99 / 2e-21 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035739 [exp] 985 / 0 AT5G49950 627 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037325 [exp] 974 / 0 AT5G49950 627 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037322 [exp] 956 / 0 AT5G49950 632 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10036590 [exp] 844 / 0 AT5G49950 638 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10035807 [exp] 366 / 2e-123 AT5G49950 283 / 6e-92 alpha/beta-Hydrolases superfamily protein (.1) Lus10035741 [exp] 267 / 8e-87 AT5G49950 144 / 2e-40 alpha/beta-Hydrolases superfamily protein (.1) Lus10001673 [exp] 206 / 2e-60 AT3G50790 536 / 0.0 esterase/lipase/thioesterase family protein (.1) Lus10017332 [exp] 169 / 1e-46 AT3G50790 431 / 9e-150 esterase/lipase/thioesterase family protein (.1) Lus10034894 [exp] 113 / 9e-26 AT2G03140 697 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G223100 [exp] 656 / 0 AT5G49950 648 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G115000 [exp] 538 / 0 AT1G34340 629 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G146500 [exp] 212 / 2e-62 AT3G50790 512 / 0.0 esterase/lipase/thioesterase family protein (.1) Potri.006G136900 [exp] 114 / 5e-26 AT2G03140 1356 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10035744 pacid=23147630 polypeptide=Lus10035744 locus=Lus10035744.g ID=Lus10035744.BGIv1.0 annot-version=v1.0 ATGGATGGATGTGGAGCAGCTGAATTTGTTTCTGGTTCTCCGTACCATCTTCTTTTCAAAGCTCTGTCTCTAATCCCTCCCGTTCACTATGCCGCTTTCA TCCTATCTCTTCTTCTGGTCTTCCTCTACAATTTCCTGGAGATTCATTTCTTCCGCAATTTCCTCACTGGCTTCAGAGGCAATCCGGTCAATCTCACTTA CAATGCTTCGTCAGAGCTCTACCACTCCATTGTTTCCAAGTGCCGAGTTCTCCACGGCAGGTATTTACCAACTCTATGGCTTTGTAGTCCACATCTACAA ACGGCATTCTTGACTTTCTTCGGGAATCCTCCTCGTTTCACCTATAAAAGGGTGCTATTCCGTACAAGTGATGGGGGGACAATTGCTTTGGACTGGTTCT TGCACTCTCATGTTAATGGCGATATTGCTGACAACTTCAATGAAACGGTCCCGCAGAAAACTGATAAAGCTCCTATTTTGATAGTTATTCCTGGCTTAAC AGGCGACTCTGATGCTTCTTACGCAAAGCACCTTGTATTCAAGATGGCAAAACAGGGTTGGAATGTTGTGGTAGCCAATCACCGTGGACTAGGAGGTGTA CAGATAACTTCTGACTGCTTCTACAATGCTGGGTGGACAGAAGACACGAGAAGAATTATTGAGCATATCCATCAGGAATATCCAGATACTCCTCTTTATG TGGTTGGGACTAGTATCGGTGCCAATATCCTGGTGAAGTATCTAGGGGAGGACTCAGTTAATGTTCCCATCTTAGGCGCTGTTGCTGTGTGTTCTCCTTG GGATCTGACGATAGGTGACAGGTTTATCAACCGAAGATTTGTGCAAAAACTTTATGACAAGGCACTCGGGGCTGGACTTGTAGGTTATGCCAAATTGCAT CAGACTATCATATCTCGGCTTATAGACTGGGATACAATGACCAAGGCGCGTTCTCTCCGGGACTTCGATAACTGTGCAACTTGTGTTATTGGGAAATTTG AGACAGTAGACACATTCTACAGACGTTCTAGCTCTGTTAACTATGTGGGGAACGTAGCAGTGCCCCTTCTTTGTATAAGTGCCTTGGATGACCCTGTTTG TACAAGGGAAGCTATTCCATGGGATGAATGCAGGGTGAATCCGAACATTGTTCTAGCTGCAACAGAGCATGGAGGCCACCTAGCTTATTATGAAGGATTA ACCGCCAGTAACATGTGGTGGGTGAGAGCTGTTAGTGAATTCCTTGAGGTGTTGCGGTCTAGCCCGTTAAAGGAGAAACCAAAAAGGGTGGAACCATCTA GCACAACCAACCCATTAGAATCGAAAATTGACCAGGGGCCTTTCATCAACGTAGTGGATGATGGAACTGTAGCTGCAGTTGTTGACATCCAGAAACACGA TGCAACAGATGACGTGGACCATACTGGCAAGGACAGTGAGGAAGAAGAAAGCACCACGGATGTGGCAACGCCCAAGAAAGTGGATCCTGGAAACGATCAT GAGTCTCCTTCTGCGAAAAAGCTGAGCGATCTGATTGATCCCATAAAGAGACAAATAACTCAACTCAGACGGCATAGCAGAACATCAATATGGTTTCTTG CTTACATAGCAATCGTAGCAACTTGGCCTGTGTTGGGTTCTGGCCTTCTTTTCTACCTCAAGAGAAAGTCACGCAGAAGCTTCAGGCGACCAGCAGTTGT GCCTAGCAGCAGATAG
AA sequence Show only first row Show all	>Lus10035744 pacid=23147630 polypeptide=Lus10035744 locus=Lus10035744.g ID=Lus10035744.BGIv1.0 annot-version=v1.0 MDGCGAAEFVSGSPYHLLFKALSLIPPVHYAAFILSLLLVFLYNFLEIHFFRNFLTGFRGNPVNLTYNASSELYHSIVSKCRVLHGRYLPTLWLCSPHLQ TAFLTFFGNPPRFTYKRVLFRTSDGGTIALDWFLHSHVNGDIADNFNETVPQKTDKAPILIVIPGLTGDSDASYAKHLVFKMAKQGWNVVVANHRGLGGV QITSDCFYNAGWTEDTRRIIEHIHQEYPDTPLYVVGTSIGANILVKYLGEDSVNVPILGAVAVCSPWDLTIGDRFINRRFVQKLYDKALGAGLVGYAKLH QTIISRLIDWDTMTKARSLRDFDNCATCVIGKFETVDTFYRRSSSVNYVGNVAVPLLCISALDDPVCTREAIPWDECRVNPNIVLAATEHGGHLAYYEGL TASNMWWVRAVSEFLEVLRSSPLKEKPKRVEPSSTTNPLESKIDQGPFINVVDDGTVAAVVDIQKHDATDDVDHTGKDSEEEESTTDVATPKKVDPGNDH ESPSAKKLSDLIDPIKRQITQLRRHSRTSIWFLAYIAIVATWPVLGSGLLFYLKRKSRRSFRRPAVVPSSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10035744 [exp]	0	1
AT1G04910			O-fucosyltransferase family pr...		Lus10037830 [exp]	9.5	0.7573
AT3G51390			DHHC-type zinc finger family p...		Lus10028384 [exp]	16.9	0.7536
AT3G22550			Protein of unknown function (D...		Lus10042606 [exp]	24.3	0.7502
AT2G05710		ACO3	aconitase 3 (.1)		Lus10021533 [exp]	31.3	0.7083
AT1G18700			DNAJ heat shock N-terminal dom...		Lus10021658 [exp]	65.3	0.7159
AT1G05500		SYT5, NTMCTYPE2...	synaptotagmin 5, ARABIDOPSIS T...		Lus10038117 [exp]	93.2	0.6723
AT1G16540		ACI2, ABA3, SIR...	SIRTINOL RESISTANT 3, LOW OSMO...		Lus10031768 [exp]	116.5	0.6794
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10000949 [exp]	119.8	0.6940
AT4G35640		ATSERAT3;2	serine acetyltransferase 3;2 (...		Lus10010679 [exp]	127.0	0.6501
AT1G18640		PSP	3-phosphoserine phosphatase (....		Lus10034686 [exp]	128.3	0.6923

Compare expression of checked genes

Lus10035744 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.