Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63780 468 / 2e-168 IMP4 Ribosomal RNA processing Brix domain protein (.1) AT4G01560 150 / 4e-43 MEE49 maternal effect embryo arrest 49, Ribosomal RNA processing Brix domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037326 [exp] 590 / 0 AT1G63780 463 / 3e-166 Ribosomal RNA processing Brix domain protein (.1) Lus10030171 [exp] 147 / 1e-41 AT4G01560 508 / 0.0 maternal effect embryo arrest 49, Ribosomal RNA processing Brix domain protein (.1) Lus10007860 [exp] 137 / 7e-38 AT4G01560 495 / 7e-177 maternal effect embryo arrest 49, Ribosomal RNA processing Brix domain protein (.1) Lus10027900 [exp] 44 / 6e-05 AT3G15460 512 / 0.0 Ribosomal RNA processing Brix domain protein (.1) Lus10002403 [exp] 44 / 0.0001 AT3G15460 519 / 0.0 Ribosomal RNA processing Brix domain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G024500 [exp] 506 / 0 AT1G63780 485 / 3e-175 Ribosomal RNA processing Brix domain protein (.1) Potri.003G201100 [exp] 506 / 0 AT1G63780 488 / 2e-176 Ribosomal RNA processing Brix domain protein (.1) Potri.002G182600 [exp] 148 / 6e-42 AT4G01560 481 / 2e-171 maternal effect embryo arrest 49, Ribosomal RNA processing Brix domain protein (.1) Potri.014G108400 [exp] 147 / 9e-42 AT4G01560 475 / 4e-169 maternal effect embryo arrest 49, Ribosomal RNA processing Brix domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0458 [flax] [poplar] IIaaRS-ABD PF04427 [flax] [poplar] Brix Brix domain
Representative CDS sequence Show only first row Show all	>Lus10035745 pacid=23147365 polypeptide=Lus10035745 locus=Lus10035745.g ID=Lus10035745.BGIv1.0 annot-version=v1.0 ATGCAGAGGCGCAACGTTCGGTTGAGGAGGGAGTATCTGTACAGAAAGAGCTTAGAGGGCAAAGAACGCCTCCGTTATGAGAACAAGCGCAAGATTCAGG AAGCTCTTTCAGCCGGAAAACCAATTCCTACTGAGCTTAGAAACGTGGAGGCGGAGCTGCGCTCTGAAATCGACCTCGAAGACGAAAAAACCGCTGTACC GAGGAGTTACATCGATGATGAGTACGTGAATGCATCGGTGATCGACCCTAAAATTCTGCTGACTACATCCCGCAATCCAAGTCAACCTCTTGTACAATTT GTAAAGGAGTTGAAACTTGTGTTCCCAAATGCTGAGCGGATAAATCGTGGTGGCCAGGTTATCTCTGAAATTATTGAGAGTTGTCGTTCTCGTGATTATA CGGATGTCATTTTGGTTCATGAGCATCGTGGCAAGCCTGATGGCATGATTATAAGCCATCTACCTTTTGGGCCAACTGCTTATTTTGGTTTGCTCAATGT GGTTACTAGACATGATATCAAGGATAAGAAAGCAATGGGAACGATGTCTGAGGCTTATCCACATCTGATTCTGGAGAATTTCAATACCAAGCTTGGTGAA AGGACAGCAAACATCTTGAAGCATCTCTTTCCAGTGCCAAAGCCAGAGACGAAGCGCATTCTCACTTTCGCAAATCAATCGGACTATATCTCATTCAGGC ATCATGTTTATGAAAAACGTGGAGGTCCAAACTCCCTTGAACTTAAGGAAGTTGGTCCACGCTTTGAAATGCGACTTTATCAGGTAAAGCTAGGGACAAT GGAGCAGACGGAAGCAAACATAGAGTGGGTGCTTCGACCATACATGAATACGGCAAAGAAGCAGAAGCACCTTGGGGATTGA
AA sequence Show only first row Show all	>Lus10035745 pacid=23147365 polypeptide=Lus10035745 locus=Lus10035745.g ID=Lus10035745.BGIv1.0 annot-version=v1.0 MQRRNVRLRREYLYRKSLEGKERLRYENKRKIQEALSAGKPIPTELRNVEAELRSEIDLEDEKTAVPRSYIDDEYVNASVIDPKILLTTSRNPSQPLVQF VKELKLVFPNAERINRGGQVISEIIESCRSRDYTDVILVHEHRGKPDGMIISHLPFGPTAYFGLLNVVTRHDIKDKKAMGTMSEAYPHLILENFNTKLGE RTANILKHLFPVPKPETKRILTFANQSDYISFRHHVYEKRGGPNSLELKEVGPRFEMRLYQVKLGTMEQTEANIEWVLRPYMNTAKKQKHLGD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63780		IMP4	Ribosomal RNA processing Brix ...		Lus10035745 [exp]	0	1
AT1G63780		IMP4	Ribosomal RNA processing Brix ...		Lus10037326 [exp]	1.0	0.9414
AT5G11200			DEAD/DEAH box RNA helicase fam...		Lus10002905 [exp]	2.0	0.8850
AT4G39280			phenylalanyl-tRNA synthetase, ...		Lus10014563 [exp]	5.2	0.8708
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Lus10009823 [exp]	6.5	0.8432
AT1G55900		TIM50, EMB1860	embryo defective 1860, Haloaci...		Lus10016610 [exp]	6.7	0.8251
AT2G40430			unknown protein		Lus10037530 [exp]	8.9	0.8436
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10021315 [exp]	10.0	0.8466
AT1G77750			Ribosomal protein S13/S18 fami...		Lus10037359 [exp]	10.7	0.8054
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10008806 [exp]	11.2	0.8270
AT5G04600			RNA-binding (RRM/RBD/RNP motif...		Lus10007730 [exp]	12.5	0.8273

Compare expression of checked genes

Lus10035745 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.