Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18730 89 / 1e-19 BRU1, MGO3, TSK TONSOKU, MGOUN3, BRUSHY1, tetratricopeptide repeat (TPR)-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035748 [exp] 335 / 2e-106 AT3G18730 1194 / 0.0 TONSOKU, MGOUN3, BRUSHY1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10037327 [exp] 310 / 8e-97 AT3G18730 1167 / 0.0 TONSOKU, MGOUN3, BRUSHY1, tetratricopeptide repeat (TPR)-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G110800 [exp] 117 / 2e-29 AT3G18730 1310 / 0.0 TONSOKU, MGOUN3, BRUSHY1, tetratricopeptide repeat (TPR)-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10035746 pacid=23147522 polypeptide=Lus10035746 locus=Lus10035746.g ID=Lus10035746.BGIv1.0 annot-version=v1.0 ATGTTGGTCGCTCTGACATCTTGCTGTATCATTCACATTTTCCATGTTCATGCAGCCAAGTTTCTCTTGCTTATCATTGATAAAACTGAATGGGCTTTGC AGTTGACTGATTCATTGTCCAGCGGATCTCAGGAATTTCTTAAACTTGACCTTTCATACTGCACCCTGACATCCACCTTCGTTCAGACACTTACCACGAA TTTAAGCCTGACTTGCTGCATTCTTGAGCTTAATCTCGAAGGAAATCCTATTCTGCCCGAGGGAGGAAGCGCGTTGGTATCACTAGTCAAGCAACCAGGG TGTTCCCTAGCAACCAGCGTGTTCCCTGAGACTTCTCATCCTAAACAAATGTCAGCTGGGACTTCCCCTCATCCTTCAATTGTGAATGATCAGCTGGAGG AACTCCATGTTGCTGAGAATGACGATCTTCATAAATTAGCCTCAACGACTGATCTACAGACAGCAACAATCGCATCTCATTCCGACCCAGCGGATCACGA GGGAAGATTAGTTGATTGTCAACTAAACATGGAGAGTGACGGCCTCGAAGTTGCTGATAGTGAGGATTCAACCAGAGTCGAAGCTGCTGCTGCTATTCGA TCTGAGCTGAACGACACATGCACAAGCTCCTCCTGGGGGAAGAAGAAGAAGAAGAATGAAGACGAGTCAATAATATCGTCTCAAATCGTTAAGGAGCTGT CGAATGGCATAAGTGCAGCCAAGGCATTGCAGGTGTTGGATTTGAGCAGGAATGGACTTTCGGTGAAAGAAGCGCCAGCAGGTCCCCCCCCCCGTCGCGG GCGGCCGTGGCGGCTGCGTCAGCTCCGTCTGCCGTAG
AA sequence Show only first row Show all	>Lus10035746 pacid=23147522 polypeptide=Lus10035746 locus=Lus10035746.g ID=Lus10035746.BGIv1.0 annot-version=v1.0 MLVALTSCCIIHIFHVHAAKFLLLIIDKTEWALQLTDSLSSGSQEFLKLDLSYCTLTSTFVQTLTTNLSLTCCILELNLEGNPILPEGGSALVSLVKQPG CSLATSVFPETSHPKQMSAGTSPHPSIVNDQLEELHVAENDDLHKLASTTDLQTATIASHSDPADHEGRLVDCQLNMESDGLEVADSEDSTRVEAAAAIR SELNDTCTSSSWGKKKKKNEDESIISSQIVKELSNGISAAKALQVLDLSRNGLSVKEAPAGPPPRRGRPWRLRQLRLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18730		BRU1, MGO3, TSK	TONSOKU, MGOUN3, BRUSHY1, tetr...		Lus10035746 [exp]	0	1
					Lus10023787 [exp]	26.5	0.7069
AT5G47550			Cystatin/monellin superfamily ...		Lus10027320 [exp]	29.5	0.7726
AT1G11060			WAPL (Wings apart-like protein...		Lus10005857 [exp]	63.9	0.7344
AT3G19920			unknown protein		Lus10017384 [exp]	65.2	0.7196
AT2G23600		ATMES2, ACL, AT...	ARABIDOPSIS THALIANA METHYL ES...		Lus10038593 [exp]	76.3	0.6894
					Lus10018953 [exp]	86.4	0.7008
AT5G24740			Protein of unknown function (D...		Lus10003834 [exp]	111.0	0.6896
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10006553 [exp]	194.2	0.6775
					Lus10036864 [exp]	206.7	0.6810

Compare expression of checked genes

Lus10035746 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.