Plant FIBer expression Database

Lus10035747 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G36000 97 / 5e-24 unknown protein
AT3G61730 96 / 2e-23 RMF reduced male fertility (.1)
AT3G62500 55 / 7e-09 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012627
[exp]
135 / 1e-38 AT5G36000 337 / 5e-115 unknown protein
Lus10010122
[exp]
129 / 1e-35 AT5G36000 271 / 2e-88 unknown protein
Lus10004013
[exp]
121 / 8e-34 AT5G36000 271 / 3e-90 unknown protein
Lus10030262
[exp]
122 / 5e-32 AT3G61740 742 / 0.0 SET domain protein 14 (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G098300
[exp]
103 / 2e-26 AT5G36000 369 / 5e-128 unknown protein
PFAM info
Representative CDS sequence
>Lus10035747 pacid=23147679 polypeptide=Lus10035747 locus=Lus10035747.g ID=Lus10035747.BGIv1.0 annot-version=v1.0
ATGATGCAGCTAGCAGAAACTTCCCCGTGGTTCAACACCGTGATTATGCAAGACTTCTTGTGGAAGTTGTCTTGCTTGAGCATCTTAAACGTTTCAGCTC
CTCTGAATCCAATGGGATTCGGATGGTTTGATCTCTATATTTCGGCAATCAAGAAGAGATCAAACCATCTGAATCTCATTGGATCCGGAGGAGCTGGAAC
GTTTAAGACACTCAAGCAAGGCAACCTCCACAAGAAGTCTTGCATAATCACGGTGTTGAAACACGGGGAAGTTTCTGCTAGCTGCATCATTGATTGTGGG
TCCAGGAATTTGGCGATCTCAGTCCAGGTCTTGGTTACGCAGAGGCTCGACTTACCGGCGGCTATAATGGAACCCCATACTCCAAAAGATATGCTGGCAA
CCACCGGTGCTTGTTTGTTAGATGGCCTCAAAAGGGGAATCTGGAAAGCCGGATTTTGTGGTGGTGCAATGCAGGTACTTGATGTGAGACATATAGAGTT
GTTCCTAAGTGAAGGATACACGAACGGGACTTGGGGGTACGAGCAGATTGGAATTTACCAAGCTGATAAGAATGCGAATACAGTGTTATGCCCTTCTCTT
GAATTAGGATAA
AA sequence
>Lus10035747 pacid=23147679 polypeptide=Lus10035747 locus=Lus10035747.g ID=Lus10035747.BGIv1.0 annot-version=v1.0
MMQLAETSPWFNTVIMQDFLWKLSCLSILNVSAPLNPMGFGWFDLYISAIKKRSNHLNLIGSGGAGTFKTLKQGNLHKKSCIITVLKHGEVSASCIIDCG
SRNLAISVQVLVTQRLDLPAAIMEPHTPKDMLATTGACLLDGLKRGIWKAGFCGGAMQVLDVRHIELFLSEGYTNGTWGYEQIGIYQADKNANTVLCPSL
ELG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G36000 unknown protein Lus10035747
[exp]
0 1
ATCG00500 ATCG00500.1, AC... acetyl-CoA carboxylase carboxy... Lus10002473
[exp]
2.8 0.9155
AT1G36160 GSD1, PAS3, GK,... PASTICCINO 3, GLOSSYHEAD 1, GU... Lus10024748
[exp]
5.0 0.8932
ATCG01280 ATCG01280.1, YC... Chloroplast Ycf2;ATPase, AAA t... Lus10004897
[exp]
5.5 0.9018
ATCG01280 ATCG01280.1, YC... Chloroplast Ycf2;ATPase, AAA t... Lus10002548
[exp]
9.4 0.9057
AT1G71220 UGGT, PSL2, EBS... PRIORITY IN SWEET LIFE 2, EMS-... Lus10015475
[exp]
13.6 0.8717
Lus10004082
[exp]
19.9 0.8984
Lus10026434
[exp]
21.2 0.8545
Lus10009498
[exp]
30.0 0.8720
AT4G17140 pleckstrin homology (PH) domai... Lus10003007
[exp]
30.9 0.8727
Lus10000297
[exp]
34.8 0.8566

Lus10035747 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.