Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18730 1180 / 0 BRU1, MGO3, TSK TONSOKU, MGOUN3, BRUSHY1, tetratricopeptide repeat (TPR)-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037327 [exp] 2429 / 0 AT3G18730 1167 / 0.0 TONSOKU, MGOUN3, BRUSHY1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10035746 [exp] 336 / 5e-106 AT3G18730 99 / 3e-23 TONSOKU, MGOUN3, BRUSHY1, tetratricopeptide repeat (TPR)-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G110800 [exp] 1465 / 0 AT3G18730 1310 / 0.0 TONSOKU, MGOUN3, BRUSHY1, tetratricopeptide repeat (TPR)-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035748 pacid=23147338 polypeptide=Lus10035748 locus=Lus10035748.g ID=Lus10035748.BGIv1.0 annot-version=v1.0 ATGGTTAAAGACGACGGGAAATTAAGCGCCTCGAAGCGAGCGTACAAGACAGCGCAAGAGGAGGGGAATCGACAAGACGAAGCGCGATGGGCGAACGTGA TAGGCAACATACTGAAGGACAGGGGAGAGTACGTTGAGGCACTCAGATGGATGCGGAAGGATTATGACGTCTCTGTCAGATACTTACCGGAGAAAGACCT GTTGGCGACTTGTCAGTCTATCGGGGAGCTCTACCTCCGTCTCGAGAACTTCTCTGATGCATTGGTTTATCAGAAAAGACATCTCGAGCTAGCAAATAGT GCAAACAACCTTGTCGAGCAGCAAAGAGCAAGCACTCAACTTGGTCGCTCATACCATGCGATGTTCTTGAGGTCCGATGATGATTACTACGCAGTTAAGA ATGCCAAAAAGTACTTCAAGCTTTCAATGAAGCTAGCTGAGACTCTCAAGGCAAATCCACCGTCTAATAATTCTTCTTTCCTTAAGGAGTACATAGATGC ACATAACAACATCGGAATGCTTGAATTGGATCTTGATAACTTGGAATTGGCAACTGATATCCTCATGAAAGGACTAAAGATCTGTGACGATGAAGAGGTA GATGAAAATGATGATGGACGGAGCAGGCTCCATCACAATCTTGGAAATTGTTACATGGAGATACGAAAGTGGGAGAAAGCCCGGGAACATATTGAGAAAG ATATTCTGATTTGTAAAAAAATTGGTCAGTGCCAAGGGGAGGCAAAGGGCTTCATAAATCTTGGTGAACTACATTATAGGGTCCAAAAGTACGAAGATGC AGTTCTTTGCTACCAGATGGCTCATAAACTTGCAAAATCCATGGAAGATGAAGATGCATTAGTGAAACAAATTGATCAGAATATCATGACCGTAAGAGAA GCAGTGAAGGTAATGGATGAGTTGAAAATCGAAGAGCAGAATCTTAAGAAGTTAACCAGAGATATGATTGCTGTAAGAGGCACGGCACGTGAACGGAAGT CTTTGCTGAAGCTGTATACAAAACTAGATCACCTTATTGAGAAATCCAGCACGATCTCTGCATGGCTGAAGCATCGTGAATTTGCAAAACAGAAAAAGGA GGTGGCAGCTCAACTATGTGACAAAATCAAGCTGAACGACTCGTATCTGGCTCTAGGAGAGTCATACCGAAAGATTAGAGACTTCAACAAGGCTTACAAA TGGTTCTCAAAGGCTTGGGAGGGATCTAAGTTGATTGGCTATTTGGAGGGTCAAGCATTAGCTAAAATAAATATCGGTGATGTTCTTGACTGTCGTGGTG ATTGGTCAGGTGCACTAGCTACTTTTGAAGAAGGCTATAGGATAGCCATGGAAGCTAATGTTCCTTCTGCCCAGATTCAAGCCCTTGAGAATATGCACTA CAGCCAAATGATGAGATTTCAGAATGCTGAAGAGGCCAGGAGGTTACAACATGAACTTGAAAAATTGAAGCAGTTTGGCGGAAGGGAGGCTGAGAAGAAC AATTTGGCCGCGGATCACTGCTCTGAGACTGACACAGAAGGTGATTATTTGTCTGATGGTTCATTTTCAAATCCGTGCTCTCCAAACTCTGGCGACTCCT TGCTTCGGAGATCCACATCTTCCGCATCCGTTGAAGAGTTCGAGGATGACACACCTCTGATTTCACTGCTCAAGTCCACTAAACGTTTGACTAGAAAAAC TAATACCGATGGCAAAGAGCCTTATGTATCTAATAATCACAATGAAGCTTCTCCAATATGTTCTGCAATCCCAACTACAAGTCAACAATCAGTTGGGCGT AAGCGTGTTAGGGTCATCCTTTCTGATGATGAAAATGAAACAAATGAGGGTGTGGACTACTTGGAGAGGAAGTTGCCTACCACTCCAGTTGAAGTTGTTG CTACATCTGACGAGACTAGGAGGAGAAACATTGGAGCATGTTCTTCATCTGAAATTCGGGATTTATCGACGGATGGTTCCAAATATGCCACTGATTCATC AAATCAAGTTAAAGATGAAGATGTTGCTTTTCTCTACAAGTCTCCAAGTGCTAAAGGGCGAGCGATAACATTCAACATTGCCAACGACCAGATAAGTTTT GAGGTTGGCTCGAGCTTAGCTTTTAGTGGATTGAGCATTGAATCTTTGAGCGTTGAAGTCGCATGCTTATACTATTTACAGCTTCCTACAGATAAGAGAT GCCAAGGTTTGTTGCCCATCATTCAGCACTTGAAACATTCTGGACAAATTTTGGAATCATTGGACGACCTTGGAGCTCTCAACGACGCGGGGAACATATT CATTGAAGTTTCCATAAATGGATGGATCCAGAAGCGGTTGATGAAACTGTACATTGACTGCTGTGGAGAGCTGCATGAAACACCTGATATAAAGTTACTA AAGAAGCTCTACATTTCGGAGGTGGAGGATGAAGTTATTGCATCCGAATGTGGGCTGCAAGATATATCTATAGCTCCATTATTGAACGCCCTACAAACAC ATAAAACAGTTCTCATGTTGGATCTTTCTCATAATTTGTTAGGAAATGGAACGGTGGAGAAACTTGAACAAATTTTCACAACTGGCCAAAAACATGGTGA TCTATCTTTAGACCTGCACTGCAACCGATTTGGTCCAACTGCATTGTTACAGATCTGTGAATGTCCTGTCCTCGTTTCCCGACTTGAGGTGCTAAATATC TCTGGTAATCGTCTCACTGATGCATGTGGATCATACCTGTCAACTATATTGGACAAATGTAAAGCTCTTTACAGTTTGAATATAGAGCGCTGCTCCATCA CATCTAGAACGATTCAAAAGGTTGCTGATGCAATACATTCTGGTTCATTCTTGGCACAACTTTCCATAGGATATAATTCTTTATCAGGAACTTCCATCAT CAATCTATTGATGAAATTATCTACCTTGAATAGCTTTACAGAACTGAATCTAAGTGGTCTGAAGTTGAACAAGCGAGTTATAGATAGCCTCTGTGAACTC ACAAAAAGCTCTTGTTTGACAAACCTGAGGGTTGGGAGCACTGGCATAGGAAATGAATGGGCTTTGCAGTTGACTGATTCATTGTCCAGCGGATCTCAGG AATTTCTTAAACTTGACCTATCATACTGCACACTGACATCCACCTTCGTTCAGACACTTACCACGAATTTAAGCCTGACTTGCTGCATTCTTGAGCTTAA TCTCGAAGGAAATCCTATTCTGCCTGAGGGAGGAAGCGCATTGGTATCACTAGTCAAGCAACCAGGGTGTTCCCTGAGACTTCTCATCCTAAACAAATGT CAGCTGGGACTTCCCCTCATCCTTCAATTGGTCCAAGCACTCGCAGAGAATGATCAGCTGGAGGAACTCCATGTTGCTGAGAATGGCGATCTTCATAAAT TAGCCTCAACGACTGATCAACAGACAGCAACAATAGCATCTCATTCCGACCCAGCGGATCACGAGGGAAGATTAGTTGATTGTCAACTAAACATGGAGAG TGACGGCCTCGAAGTTGCTGATAGTGAGGATTCAACCAGAGTCGAAGCTGCTGCTGCTATTCGATCTGAGCTGAACGACACATGCACAAGCTCCTCCTGG GGGAAGAAGAAGAAGAAGAAGAATGAAGACGAGCCAATAATATCGTCTCAAATCGTTAAGGAGCTGTCGGATGGCATAAGTGCAGCCAAGGCATTGCAGG TGTTGGATTTGAGCAGGAATGGACTTTCGGTGAAAGAAGCGGAAGCATTGTATGGTTCGTGGAGAGTGGGGAAGAAGGGTTCCTCAGCTCAGAAGCACGT TAAAGACCAAATAGTCCATTTCTCAGTTGCAGGAAAAAAGTGTTGCAGCAAGCCGTGCTGCAGAAGGGAATGA
AA sequence Show only first row Show all	>Lus10035748 pacid=23147338 polypeptide=Lus10035748 locus=Lus10035748.g ID=Lus10035748.BGIv1.0 annot-version=v1.0 MVKDDGKLSASKRAYKTAQEEGNRQDEARWANVIGNILKDRGEYVEALRWMRKDYDVSVRYLPEKDLLATCQSIGELYLRLENFSDALVYQKRHLELANS ANNLVEQQRASTQLGRSYHAMFLRSDDDYYAVKNAKKYFKLSMKLAETLKANPPSNNSSFLKEYIDAHNNIGMLELDLDNLELATDILMKGLKICDDEEV DENDDGRSRLHHNLGNCYMEIRKWEKAREHIEKDILICKKIGQCQGEAKGFINLGELHYRVQKYEDAVLCYQMAHKLAKSMEDEDALVKQIDQNIMTVRE AVKVMDELKIEEQNLKKLTRDMIAVRGTARERKSLLKLYTKLDHLIEKSSTISAWLKHREFAKQKKEVAAQLCDKIKLNDSYLALGESYRKIRDFNKAYK WFSKAWEGSKLIGYLEGQALAKINIGDVLDCRGDWSGALATFEEGYRIAMEANVPSAQIQALENMHYSQMMRFQNAEEARRLQHELEKLKQFGGREAEKN NLAADHCSETDTEGDYLSDGSFSNPCSPNSGDSLLRRSTSSASVEEFEDDTPLISLLKSTKRLTRKTNTDGKEPYVSNNHNEASPICSAIPTTSQQSVGR KRVRVILSDDENETNEGVDYLERKLPTTPVEVVATSDETRRRNIGACSSSEIRDLSTDGSKYATDSSNQVKDEDVAFLYKSPSAKGRAITFNIANDQISF EVGSSLAFSGLSIESLSVEVACLYYLQLPTDKRCQGLLPIIQHLKHSGQILESLDDLGALNDAGNIFIEVSINGWIQKRLMKLYIDCCGELHETPDIKLL KKLYISEVEDEVIASECGLQDISIAPLLNALQTHKTVLMLDLSHNLLGNGTVEKLEQIFTTGQKHGDLSLDLHCNRFGPTALLQICECPVLVSRLEVLNI SGNRLTDACGSYLSTILDKCKALYSLNIERCSITSRTIQKVADAIHSGSFLAQLSIGYNSLSGTSIINLLMKLSTLNSFTELNLSGLKLNKRVIDSLCEL TKSSCLTNLRVGSTGIGNEWALQLTDSLSSGSQEFLKLDLSYCTLTSTFVQTLTTNLSLTCCILELNLEGNPILPEGGSALVSLVKQPGCSLRLLILNKC QLGLPLILQLVQALAENDQLEELHVAENGDLHKLASTTDQQTATIASHSDPADHEGRLVDCQLNMESDGLEVADSEDSTRVEAAAAIRSELNDTCTSSSW GKKKKKKNEDEPIISSQIVKELSDGISAAKALQVLDLSRNGLSVKEAEALYGSWRVGKKGSSAQKHVKDQIVHFSVAGKKCCSKPCCRRE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18730		BRU1, MGO3, TSK	TONSOKU, MGOUN3, BRUSHY1, tetr...		Lus10035748 [exp]	0	1
AT2G20000		CDC27b, HBT	HOBBIT, CDC27 family protein ...		Lus10012968 [exp]	8.9	0.8407
AT5G05560		EMB2771, APC1	EMBRYO DEFECTIVE 2771, E3 ubiq...		Lus10028975 [exp]	17.2	0.8408
AT5G01630		BRCA2(V), ATBRC...	BRCA2-like B (.1)		Lus10000317 [exp]	22.9	0.8355
AT3G18730		BRU1, MGO3, TSK	TONSOKU, MGOUN3, BRUSHY1, tetr...		Lus10037327 [exp]	27.5	0.8293
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Lus10026725 [exp]	33.6	0.8128
AT2G46200			unknown protein		Lus10022202 [exp]	39.0	0.7376
AT1G40087			Plant transposase (Ptta/En/Spm...		Lus10035798 [exp]	41.6	0.8051
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Lus10023656 [exp]	55.1	0.7995
AT3G55510		RBL	REBELOTE, Noc2p family (.1)		Lus10020167 [exp]	59.7	0.8003
AT3G20070		TTN9	titan9 (.1.2)		Lus10026248 [exp]	69.6	0.7999

Compare expression of checked genes

Lus10035748 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.