Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51630 555 / 0 O-fucosyltransferase family protein (.1) AT3G21190 547 / 0 O-fucosyltransferase family protein (.1) AT4G38390 101 / 5e-23 RHS17 root hair specific 17 (.1) AT5G65470 96 / 3e-21 O-fucosyltransferase family protein (.1) AT4G16650 96 / 3e-21 O-fucosyltransferase family protein (.1) AT5G64600 95 / 9e-21 O-fucosyltransferase family protein (.1) AT1G14020 94 / 9e-21 O-fucosyltransferase family protein (.1) AT1G76270 94 / 1e-20 O-fucosyltransferase family protein (.1) AT4G24530 93 / 3e-20 O-fucosyltransferase family protein (.1) AT1G20550 93 / 4e-20 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037328 [exp] 842 / 0 AT1G51630 556 / 0.0 O-fucosyltransferase family protein (.1) Lus10028957 [exp] 113 / 6e-27 AT4G16650 771 / 0.0 O-fucosyltransferase family protein (.1) Lus10007481 [exp] 111 / 2e-26 AT4G16650 766 / 0.0 O-fucosyltransferase family protein (.1) Lus10004729 [exp] 111 / 3e-26 AT4G16650 756 / 0.0 O-fucosyltransferase family protein (.1) Lus10007792 [exp] 108 / 4e-25 AT4G16650 751 / 0.0 O-fucosyltransferase family protein (.1) Lus10012270 [exp] 104 / 7e-24 AT1G76270 758 / 0.0 O-fucosyltransferase family protein (.1) Lus10013234 [exp] 103 / 1e-23 AT1G76270 791 / 0.0 O-fucosyltransferase family protein (.1) Lus10030754 [exp] 102 / 2e-23 AT1G76270 787 / 0.0 O-fucosyltransferase family protein (.1) Lus10023948 [exp] 102 / 3e-23 AT1G20550 697 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G250600 [exp] 637 / 0 AT1G51630 588 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G008300 [exp] 628 / 0 AT1G51630 599 / 0.0 O-fucosyltransferase family protein (.1) Potri.003G077500 [exp] 112 / 2e-26 AT4G16650 785 / 0.0 O-fucosyltransferase family protein (.1) Potri.001G157400 [exp] 110 / 3e-26 AT4G16650 773 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G087300 [exp] 103 / 9e-24 AT1G38131 704 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G173500 [exp] 100 / 7e-23 AT1G38131 697 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 100 / 1e-22 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.019G080900 [exp] 100 / 1e-22 AT1G35510 770 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G249900 [exp] 98 / 6e-22 AT1G76270 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G111500 [exp] 96 / 3e-21 AT2G01480 906 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10035749 pacid=23147461 polypeptide=Lus10035749 locus=Lus10035749.g ID=Lus10035749.BGIv1.0 annot-version=v1.0 ATGGGAGTGGATTTGAGGCAAGTTGTTGCTGGAATACTCACTATCACCATGTTCGTCATGCTCGGCGATATGCTCAAGCGGGATTACGTCGACACTCCTC AAGAAAGGTTTCCCAGTGGTGGTGAAGGCAGAGATGTTGAATTTGACAGTGGGAGAGTCATGGAGAAATTCTCTATGAAGAGCAATGGACCTTGGATGGA AGAGAGCCAAGAGCTTAGACCTTGTTGGACCAAGAAGTCTGAATATGATGAGATAGATGATATTAAAGGGTTTGTTACATTCTCATTAACTAATGGACCG GAGTACCACGTCTCACAGATTAGTGATGCAGTGACGATAGCTAGATATCTTAAGGCAACTCTGGTAGTTCCTGACATTAGAGGAGACCGGCCAGGCGATG AGAGGAAGTTTGAGGAAATCTATGACGTAAGGAAATTCGTGAATAGTCTGGATGGGGTGGTTAAAGTGGCAAGAGAGCTTCCGGAATCTATATCTATTCG AGATTTTGAAGTTGTCAGGGTTCCCAATCGTGTTACGGAAGAGCACATTGCGGAAAACATCGAACCAGTTTTCAAAAGGAAGGGTAACATCAGAGTGGCA ACCTACTTCCCCTCTGTAAATATGAGAAAGACCATACAGAAGAGTGGCAGCAGCGATTCACTAGCGTGTTTGGCCATGTTCGACACTTTGGAGTTGAAGC CCGAGGTTAACGAGGTGGTCGATGACATGGTTGCGAGGTTGAAAACTTTGAGTCGAAAGTCTGACGGCCGGTTCGTAGCAGTGGATTTGAGAGTTGACAT GTTGGAGAAGAAGGGTTGTCAGGGAGGTGCAACAAAGAACTGTTACAATGGACACGAAATCGCCTTATTCTTGAGGAAGATCGGATTCGGTCAGGAAACC GTGATCTATCTAACTCAGTCAAGGTGGGATGATAGTCTTGAAGTATTGAAGGACATCTTCCCTAAAACTTACACAAAGGAAAGTGTAATGTCAGCAGAGA AGAAACCAAAGTTTTTGGAAGCAGAAGATTCCGAGCTCGAGAAGGTCATGGACTTCTACTTATGTACAAGGAGCGACGTCTTTGTACCGGCCATCTCCGG CCTGTTCTACGCCAATGTAGCCGGGAAGAGAATCGCTGCGGGGAAGACTCAAATACTAGTACCAGCAGAGATCCCGGGGACATCGTCGGCAGTCACCAGC CATTTCTCTCCATACATCTCAAAGAGGAACCACATGGCCTATACATGTTTTTGCTAG
AA sequence Show only first row Show all	>Lus10035749 pacid=23147461 polypeptide=Lus10035749 locus=Lus10035749.g ID=Lus10035749.BGIv1.0 annot-version=v1.0 MGVDLRQVVAGILTITMFVMLGDMLKRDYVDTPQERFPSGGEGRDVEFDSGRVMEKFSMKSNGPWMEESQELRPCWTKKSEYDEIDDIKGFVTFSLTNGP EYHVSQISDAVTIARYLKATLVVPDIRGDRPGDERKFEEIYDVRKFVNSLDGVVKVARELPESISIRDFEVVRVPNRVTEEHIAENIEPVFKRKGNIRVA TYFPSVNMRKTIQKSGSSDSLACLAMFDTLELKPEVNEVVDDMVARLKTLSRKSDGRFVAVDLRVDMLEKKGCQGGATKNCYNGHEIALFLRKIGFGQET VIYLTQSRWDDSLEVLKDIFPKTYTKESVMSAEKKPKFLEAEDSELEKVMDFYLCTRSDVFVPAISGLFYANVAGKRIAAGKTQILVPAEIPGTSSAVTS HFSPYISKRNHMAYTCFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51630			O-fucosyltransferase family pr...		Lus10035749 [exp]	0	1
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Lus10026338 [exp]	1.7	0.9391
AT1G51630			O-fucosyltransferase family pr...		Lus10037328 [exp]	2.4	0.9204
AT4G10840			Tetratricopeptide repeat (TPR)...		Lus10017304 [exp]	3.9	0.9220
AT1G14020			O-fucosyltransferase family pr...		Lus10026624 [exp]	4.2	0.9239
AT1G76180		ERD14	EARLY RESPONSE TO DEHYDRATION ...		Lus10021827 [exp]	5.7	0.9114
AT4G08810		SUB1	calcium ion binding (.1)		Lus10039176 [exp]	12.0	0.9246
AT1G61667			Protein of unknown function, D...		Lus10018396 [exp]	13.0	0.8809
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10016897 [exp]	13.1	0.9046
AT4G10840			Tetratricopeptide repeat (TPR)...		Lus10003201 [exp]	16.5	0.9066
AT1G01225			NC domain-containing protein-r...		Lus10005981 [exp]	16.5	0.9051

Compare expression of checked genes

Lus10035749 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.