Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21200 362 / 6e-126 PGR7 proton gradient regulation 7 (.1) AT3G03890 63 / 4e-11 FMN binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037330 [exp] 621 / 0 AT3G21200 368 / 6e-128 proton gradient regulation 7 (.1) Lus10010649 [exp] 49 / 2e-06 AT3G03890 409 / 9e-144 FMN binding (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G250200 [exp] 403 / 6e-142 AT3G21200 419 / 3e-148 proton gradient regulation 7 (.1) Potri.008G008801 [exp] 128 / 2e-36 AT3G21200 145 / 3e-43 proton gradient regulation 7 (.1) Potri.013G057700 [exp] 54 / 5e-08 AT3G03890 429 / 6e-153 FMN binding (.1.2) Potri.019G035200 [exp] 54 / 5e-08 AT3G03890 452 / 4e-161 FMN binding (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10615 [flax] [poplar] DUF2470 Protein of unknown function (DUF2470)
Representative CDS sequence Show only first row Show all	>Lus10035751 pacid=23147406 polypeptide=Lus10035751 locus=Lus10035751.g ID=Lus10035751.BGIv1.0 annot-version=v1.0 ATGCTGCACCTCCATAGCCAAGCTGGACTGAGCTCCAGCTCTCCGCATATCCCGCTTTACCCACTAATTTCTCCTCGTCGACCCATTCCCCATTTCCAAC CCTCCTTCCCCAACCCACAACGCCCCAAACTCTCCTTAAGATGCTCTGCCTCCGCCGTCGCTCTCGATGCTCCTGAGCTACTACACAAGCCTTTACCCGC TGAGGTCTCCAGAACCATCGTCGAATTGTCCTCCGTCGCCACTCTCTCGGCCATCACCGAACAAGGCTGGCCTCTCAGCATCGGCGTTCCTTTCGCGGTG GATGCTGAAGATGGGACTCCCATTCTCTGCCTCGCCGATTCCCATCGAATTGTGACTCTCGGCGAGCGGTCCAGCCTCAATGTTCGGCTGGAGCAGAACG GAATTCGAACTGCTCAGTGCACGATTCAAGGTAGTCTAGTGAAGCCAGATGATTCAATGCAGTTAAAGAGTCTTACTTCCACGTGGAGAAAAAGATTTGG AAACGAAGTTGAGGAAGACCTTGTATACATTGTTGATGTTGAAAAAGTACTTCAGATGGAAGACTTCATGGAGGATGGCATGTGGGTTTCTTCATTGGAA TACAAAACCGCCCTTCCTGATCCTCTCCGGAACTCCGCAGAAGCACTCGTCAAAGAAATTAATGCCAATAATAGGGAAGATGTCTACAGATTTTGCAATG TATATGTTGATCTGGACTTCCAGGTTACTGAAGCAAAGATGATATGGATTGATAGGCTAGGTTTTGATGTTCGTCTAACCTCTTCTCAGAAGGGGTCTTT TGATGTCAGAATACCTTTCCCAAGAGAAGTGACGGATGAGAAAGGTGCAAAGTCATCCTTCAATGGCATGTCACAGTTGGCGTGGGAAGTGGAGAAAAAT TATCAAGCCCCAAATTTTGAGAAGGTGAAACAATTGAAGCAGATAGCTTGA
AA sequence Show only first row Show all	>Lus10035751 pacid=23147406 polypeptide=Lus10035751 locus=Lus10035751.g ID=Lus10035751.BGIv1.0 annot-version=v1.0 MLHLHSQAGLSSSSPHIPLYPLISPRRPIPHFQPSFPNPQRPKLSLRCSASAVALDAPELLHKPLPAEVSRTIVELSSVATLSAITEQGWPLSIGVPFAV DAEDGTPILCLADSHRIVTLGERSSLNVRLEQNGIRTAQCTIQGSLVKPDDSMQLKSLTSTWRKRFGNEVEEDLVYIVDVEKVLQMEDFMEDGMWVSSLE YKTALPDPLRNSAEALVKEINANNREDVYRFCNVYVDLDFQVTEAKMIWIDRLGFDVRLTSSQKGSFDVRIPFPREVTDEKGAKSSFNGMSQLAWEVEKN YQAPNFEKVKQLKQIA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21200		PGR7	proton gradient regulation 7 (...		Lus10035751 [exp]	0	1
AT5G36120		atylmg3, CCB3	"cofactor assembly, complex C ...		Lus10013424 [exp]	2.8	0.9121
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Lus10010003 [exp]	3.3	0.8692
AT4G27990		ATYLMG1-2	YGGT family protein (.1)		Lus10009586 [exp]	3.7	0.9033
AT3G21200		PGR7	proton gradient regulation 7 (...		Lus10037330 [exp]	4.2	0.8754
AT1G11430			plastid developmental protein ...		Lus10018398 [exp]	7.0	0.8783
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Lus10028683 [exp]	8.0	0.8864
AT2G16800			high-affinity nickel-transport...		Lus10019792 [exp]	8.1	0.8643
AT5G13510		EMB3136	EMBRYO DEFECTIVE 3136, Ribosom...		Lus10001982 [exp]	9.8	0.8960
AT5G65250			unknown protein		Lus10023151 [exp]	10.4	0.8371
AT3G23760			unknown protein		Lus10043212 [exp]	12.0	0.8800

Compare expression of checked genes

Lus10035751 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.