Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73090 350 / 8e-121 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037331 [exp] 575 / 0 AT1G73090 370 / 1e-128 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G250100 [exp] 329 / 8e-113 AT1G73090 329 / 4e-113 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035752 pacid=23147393 polypeptide=Lus10035752 locus=Lus10035752.g ID=Lus10035752.BGIv1.0 annot-version=v1.0 ATGAAAGCTTCTGCCGCCACTCTCAGCAGTAGTTACCTTCAAACCCTCCATTTTCTACCATCGCCCAACTTCTCCCTCTCTTCCCACCCGCAACCCTCCA CCACCTTCTTCCCTACCACCACAGACTCGAAGAAGTCAAATTATACCAAGAAGCATGCTGGTTGTTCTTCTTCTTCTTGCCGAGCTGCCGTTGGCCCCGC CAACGGATTTCAAAAGCCTTCCCAATCGCCGTGGGATGAGAAGCCCTACGAGATTCTGCCCAGTGGGAAGAAGGCTTACTTAGACGAGCAAGACGTAGTT ACGTTTCTCGACCCGCCCATCGGTTTGATTCCTCTTGACCCGGCTTCCTACAATCCTGCTGCCTACCTCTGGAAGAAAATCGACGATGTTCCTGAAGAGC GGCGCCATAGATTGATCAAACTATTGGATCCCAGGCTCATATCAAGAGCTTGGGAAATTGCCGGGACACGTTATCAGGATTCTAAGCTAGCTAAGCAGAT TGCATCCAAGGTTTCGGCATGTGAAGATGGACAGAGATTACTTGAGTTCTATAATTGCCGATGCAGCGGAGGTCCTTTCCCAATTTCCTGGATGAAATTC TTCAAGAAGGCTTTGTTTCGCTCCAACGATGGGAAGATCTATGGTAGATTTATCGCTGGAGGGGTTGTGGGTAAAATTGCAAACTCCATCAGCCCGCTCT ACTTTTTGGCAACCGAAAGTAGAGAAGTGATGTCGACAGAGCAGCCTTGTGATTTAGCTTATGAATTTGGCGACGGGCACTTGAAGTTGGATAACTATCC ACTAGGTTTTCCCAAACCAGGAAAGCACCCATATCCATTCGACGACCACGTTGTGGTGTATGTTCGTCACATTGGACCAGGTGTATCGGTCGGGCAAGCG TGGCAGGAAGGGAAGGAGTTGCATCAGGTGCCGAGGAAGCTGTGCAGCGAGATTCTGATGGTGAAAGACTACGGTGCATCATCGACAGGCTGA
AA sequence Show only first row Show all	>Lus10035752 pacid=23147393 polypeptide=Lus10035752 locus=Lus10035752.g ID=Lus10035752.BGIv1.0 annot-version=v1.0 MKASAATLSSSYLQTLHFLPSPNFSLSSHPQPSTTFFPTTTDSKKSNYTKKHAGCSSSSCRAAVGPANGFQKPSQSPWDEKPYEILPSGKKAYLDEQDVV TFLDPPIGLIPLDPASYNPAAYLWKKIDDVPEERRHRLIKLLDPRLISRAWEIAGTRYQDSKLAKQIASKVSACEDGQRLLEFYNCRCSGGPFPISWMKF FKKALFRSNDGKIYGRFIAGGVVGKIANSISPLYFLATESREVMSTEQPCDLAYEFGDGHLKLDNYPLGFPKPGKHPYPFDDHVVVYVRHIGPGVSVGQA WQEGKELHQVPRKLCSEILMVKDYGASSTG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73090			unknown protein		Lus10035752 [exp]	0	1
AT1G12650			unknown protein		Lus10005657 [exp]	1.0	0.8652
AT2G39140		PDE328, SVR1	SUPPRESSOR OF VARIEGATION 1, P...		Lus10037966 [exp]	6.0	0.8122
AT3G13040	GARP		myb-like HTH transcriptional r...		Lus10028102 [exp]	12.6	0.8300
AT2G45530			RING/U-box superfamily protein...		Lus10033252 [exp]	16.3	0.8261
AT1G32560		AtLEA4-1	Late Embryogenesis Abundant 4-...		Lus10040088 [exp]	20.0	0.7949
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10023021 [exp]	23.8	0.8131
AT4G28706			pfkB-like carbohydrate kinase ...		Lus10000210 [exp]	24.1	0.7862
AT3G52230			unknown protein		Lus10037916 [exp]	25.5	0.7976
AT5G66240			Transducin/WD40 repeat-like su...		Lus10021575 [exp]	30.7	0.8148
					Lus10023010 [exp]	33.3	0.8082

Compare expression of checked genes

Lus10035752 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.