Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008314 [exp] 261 / 2e-90 ND / Lus10028053 [exp] 269 / 4e-89 AT3G11080 120 / 8e-29 receptor like protein 35 (.1) Lus10028050 [exp] 232 / 6e-79 ND 36 / 0.004 Lus10008311 [exp] 224 / 8e-76 ND 35 / 0.008 Lus10003753 [exp] 130 / 8e-39 ND / Lus10029618 [exp] 129 / 4e-38 ND / Lus10003755 [exp] 128 / 5e-38 ND 37 / 0.002 Lus10029619 [exp] 127 / 1e-37 ND / Lus10032770 [exp] 127 / 3e-37 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G208400 [exp] 41 / 0.0001 AT5G48540 52 / 1e-08 receptor-like protein kinase-related family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035753 pacid=23147670 polypeptide=Lus10035753 locus=Lus10035753.g ID=Lus10035753.BGIv1.0 annot-version=v1.0 ATGGATTACGCGTCAAAATCGGCAATCACGGTAATCTTGTTGATGGGTGTTTTGAGTACTTTTGTCGTTGACGCTAAACTTCCGGACAAGAGCATCATCA GCGGTCCTGATTGTTCAGGACGGTCTAACGATATGTCGTATAACAAGAAAGTGTCGCGTCTTCTTGACATCTTCGTTGACGAGACAAAGAACATTCACAG GGATCATCACGTTGATTATGAGTACAAACACAGTTTTCCCGATTCTGATTTTGGATCGGTTACTGGCGGGGCGACTTGCGACAGACACCTTTGGAAGTTG GATTGTTGGTCGTGCCTCCTTACCGCGAAGAACAAGATCTACAACAATTGTGAGCGTACCCACGATGCGGAAGTTAAACTCAAAGATTGCTCTATCTGGT TTAAGAAAATCCATGGTTTATCGAAAATGGGATACGCGAAAATACGGCTCGACATCGATTACCAACGGTTAGTCATGACCGTGAAGGGCAACTCATGTGA TATATCGGAGTTTGGAGTAGAGCATAACGGATTTGCATATGAGCTCGCTTGGTGGTCTCACAATCTAGCATCCACCCTATTAAGGAAGGCGCCTCCTGAT GACTTGTGGTTTTGA
AA sequence Show only first row Show all	>Lus10035753 pacid=23147670 polypeptide=Lus10035753 locus=Lus10035753.g ID=Lus10035753.BGIv1.0 annot-version=v1.0 MDYASKSAITVILLMGVLSTFVVDAKLPDKSIISGPDCSGRSNDMSYNKKVSRLLDIFVDETKNIHRDHHVDYEYKHSFPDSDFGSVTGGATCDRHLWKL DCWSCLLTAKNKIYNNCERTHDAEVKLKDCSIWFKKIHGLSKMGYAKIRLDIDYQRLVMTVKGNSCDISEFGVEHNGFAYELAWWSHNLASTLLRKAPPD DLWF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10035753 [exp]	0	1
AT2G29360			NAD(P)-binding Rossmann-fold s...		Lus10010876 [exp]	1.0	0.9156
AT5G42650		CYP74A, AOS, DD...	DELAYED DEHISCENCE 2, CYTOCHRO...		Lus10021015 [exp]	7.0	0.8565
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Lus10041249 [exp]	8.5	0.9026
AT3G07425			unknown protein		Lus10009587 [exp]	8.6	0.9141
AT1G66470	bHLH	AtRHD6, RHD6, b...	ROOT HAIR DEFECTIVE6 (.1)		Lus10033592 [exp]	10.4	0.8880
AT1G77980	MADS	AGL66	AGAMOUS-like 66 (.1)		Lus10039704 [exp]	16.4	0.8232
AT1G61050			alpha 1,4-glycosyltransferase ...		Lus10011206 [exp]	19.7	0.9021
AT2G16750			Protein kinase protein with ad...		Lus10019787 [exp]	20.4	0.8996
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10021392 [exp]	22.5	0.8324
AT1G06980			unknown protein		Lus10026407 [exp]	23.2	0.8918

Compare expression of checked genes

Lus10035753 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.